Non-Coding RNA Search

Ss1.1-Emb1-C0005185_F08.5

Sequence:


               
               TAAAAATGTACAAAACTTAAAAACAAAACACAGTTTTAGAAAAAGACAAAAAAAAAAGAG
AGAGAGAGAGAGAGAGCGCGAGCGAGCGTGTGCAAGAGGTTGCGAGCGGGGCCTCGAGGT
GTCCAGAGCCCCTGCAAGTATGCACTGAGAAATTTATCTACAGGTCGTTTGACAAAAATG
AACAATATCCTATTTATTGTATATACTGTTTTATTATAAATCGTGGATTGTATATTGCAT
TCTGTAAACCTGCTGTGGTCCCGTGGTGTGCAAATTCGCATGGTTGGGGGGAGGGAGAAG
AACCTCTTGCGGGAGCTTTTTTTTTTTCTTTCTTTCTTATTTTTCACTCTTTTGGGTTTT
CTCTTCTGTTGTTGTTGTTGTTTTCTGTTGGCAGGACACACCCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAATGTACAAAACTTAAAAACAAAACACAGTTTTAGAAAAAGACAAAAAAAAAAGAG
AGAGAGAGAGAGAGAGCGCGAGCGAGCGTGTGCAAGAGGTTGCGAGCGGGGCCTCGAGGT
GTCCAGAGCCCCTGCAAGTATGCACTGAGAAATTTATCTACAGGTCGTTTGACAAAAATG
AACAATATCCTATTTATTGTATATACTGTTTTATTATAAATCGTGGATTGTATATTGCAT
TCTGTAAACCTGCTGTGGTCCCGTGGTGTGCAAATTCGCATGGTTGGGGGGAGGGAGAAG
AACCTCTTGCGGGAGCTTTTTTTTTTTCTTTCTTTCTTATTTTTCACTCTTTTGGGTTTT
CTCTTCTGTTGTTGTTGTTGTTTTCTGTTGGCAGGACACACCCAAAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               38-157, - strand, RNAz p=0.702656
               

               
               47-195, - strand, RNAz p=0.916081

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-157, - strand, RNAz p=0.702656
               

               
               47-195, - strand, RNAz p=0.916081

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-408, gnl|bosTau2|chr2 (79011891-79012292)
               

               
               1-408, gnl|canFam2|chr2 (75653373-75652591)
               

               
               1-408, gnl|dasNov1|scaffold_2630 (12732-11924)
               

               
               1-408, gnl|hg17|chr1 (27544742-27545514)
               

               
               1-408, gnl|Hg17|chr1 (27545372-27544970)
               

               
               1-408, gnl|loxAfr1|scaffold_60601 (7466-6684)
               

               
               1-408, gnl|mm7|chr4 (132456220-132455477)
               

               
               1-408, gnl|Mm7|chr4 (132455621-132456020)
               

               
               1-408, gnl|oryCun1|scaffold_204038 (5415-4699)
               

               
               1-408, gnl|panTro1|chr1_random (57219673-57220435)
               

               
               1-408, gnl|rheMac2|chr1 (30217402-30218174)
               

               
               1-408, gnl|rn3|chr5 (152044607-152045380)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr2 (79011891-79012292)
               

               
               1-408, gnl|canFam2|chr2 (75653373-75652591)
               

               
               1-408, gnl|dasNov1|scaffold_2630 (12732-11924)
               

               
               1-408, gnl|hg17|chr1 (27544742-27545514)
               

               
               1-408, gnl|Hg17|chr1 (27545372-27544970)
               

               
               1-408, gnl|loxAfr1|scaffold_60601 (7466-6684)
               

               
               1-408, gnl|mm7|chr4 (132456220-132455477)
               

               
               1-408, gnl|Mm7|chr4 (132455621-132456020)
               

               
               1-408, gnl|oryCun1|scaffold_204038 (5415-4699)
               

               
               1-408, gnl|panTro1|chr1_random (57219673-57220435)
               

               
               1-408, gnl|rheMac2|chr1 (30217402-30218174)
               

               
               1-408, gnl|rn3|chr5 (152044607-152045380)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

	38-157, - strand, RNAz p=0.702656
	47-195, - strand, RNAz p=0.916081

	1-408, gnl\|bosTau2\|chr2 (79011891-79012292)
	1-408, gnl\|canFam2\|chr2 (75653373-75652591)
	1-408, gnl\|dasNov1\|scaffold_2630 (12732-11924)
	1-408, gnl\|hg17\|chr1 (27544742-27545514)
	1-408, gnl\|Hg17\|chr1 (27545372-27544970)
	1-408, gnl\|loxAfr1\|scaffold_60601 (7466-6684)
	1-408, gnl\|mm7\|chr4 (132456220-132455477)
	1-408, gnl\|Mm7\|chr4 (132455621-132456020)
	1-408, gnl\|oryCun1\|scaffold_204038 (5415-4699)
	1-408, gnl\|panTro1\|chr1_random (57219673-57220435)
	1-408, gnl\|rheMac2\|chr1 (30217402-30218174)
	1-408, gnl\|rn3\|chr5 (152044607-152045380)