Non-Coding RNA Search

Ss1.1-Emb1-C0005186_H21.5

Sequence:


               
               CCCGCCCGAGGGTGAGCGACTCCTGTACTGTAGGGAAGAAGTGGGAACTGAAATGGTATT
TTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAATAAATAAAAAAAATTTAAA
GTTTTAAAGAAAGAACTATGAGGAAAAAGAACCCCGTCCTTCCCAGCCCCGGCCAATTTT
AAAAACACGGACCTTCCCCTCACAACCCTCCCCTCCCCTTTTCTTTTTAAGCGTGAAACA
GCCCAGGGCCAGGGCCTCACTGGGGCAGGGACACCCGGGATGAGTTTCTCTGGGGCTTGA
TTTTCGTTCTGTCGGTTGTTTTTTCTCCTCCACGCTGGGGCTGCGGAAGGGTGGGGGGTT
TACAGTCCCGCCCCCTCGCACTGCACTGTCTTTCTGCCCCAGGGGCAGAGGGGTCTTCCC
AACCCTCCCCTTATTTTCGGTGATTTTTGTGTGAGAATATTAATATTAAAAAATAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCCCGAGGGTGAGCGACTCCTGTACTGTAGGGAAGAAGTGGGAACTGAAATGGTATT
TTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAATAAATAAAAAAAATTTAAA
GTTTTAAAGAAAGAACTATGAGGAAAAAGAACCCCGTCCTTCCCAGCCCCGGCCAATTTT
AAAAACACGGACCTTCCCCTCACAACCCTCCCCTCCCCTTTTCTTTTTAAGCGTGAAACA
GCCCAGGGCCAGGGCCTCACTGGGGCAGGGACACCCGGGATGAGTTTCTCTGGGGCTTGA
TTTTCGTTCTGTCGGTTGTTTTTTCTCCTCCACGCTGGGGCTGCGGAAGGGTGGGGGGTT
TACAGTCCCGCCCCCTCGCACTGCACTGTCTTTCTGCCCCAGGGGCAGAGGGGTCTTCCC
AACCCTCCCCTTATTTTCGGTGATTTTTGTGTGAGAATATTAATATTAAAAAATAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               88-206, + strand, RNAz p=0.800351
               

               
               322-492, - strand, RNAz p=0.998722

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-206, + strand, RNAz p=0.800351
               

               
               322-492, - strand, RNAz p=0.998722

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               328-467, DB518739 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB518739.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EJ0-ahl-o-19-0-UI.r2 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM716880.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EO0-ahx-h-11-0-UI.r1 UI-E-EO0 Homo sapiens cDNA clone 
(gb|BM722420.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EJ0-ais-m-04-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM724732.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-CF-DU0-aaa-k-02-0-UI.s1 UI-CF-DU0 Homo sapiens cDNA clone 
(gb|BU674067.1|), blast E-value=0, identity=96.43% 
               

               
               322-467, LB0175.CR_O05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820358.1|), 
blast E-value=0, identity=97.95%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               328-467, DB518739 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB518739.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EJ0-ahl-o-19-0-UI.r2 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM716880.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EO0-ahx-h-11-0-UI.r1 UI-E-EO0 Homo sapiens cDNA clone 
(gb|BM722420.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-E-EJ0-ais-m-04-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM724732.1|), blast E-value=0, identity=96.43% 
               

               
               328-467, UI-CF-DU0-aaa-k-02-0-UI.s1 UI-CF-DU0 Homo sapiens cDNA clone 
(gb|BU674067.1|), blast E-value=0, identity=96.43% 
               

               
               322-467, LB0175.CR_O05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820358.1|), 
blast E-value=0, identity=97.95%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-492, gnl|bosTau2|chr19 (15378998-15378588)
               

               
               88-492, gnl|Hg17|chr17 (7698451-7698839)
               

               
               88-492, gnl|Mm7|chr11 (69480475-69480085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-492, gnl|bosTau2|chr19 (15378998-15378588)
               

               
               88-492, gnl|Hg17|chr17 (7698451-7698839)
               

               
               88-492, gnl|Mm7|chr11 (69480475-69480085)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ebs (0.118301)

	88-206, + strand, RNAz p=0.800351
	322-492, - strand, RNAz p=0.998722

	328-467, DB518739 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB518739.1\|), blast E-value=0, identity=96.43%
	328-467, UI-E-EJ0-ahl-o-19-0-UI.r2 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM716880.1\|), blast E-value=0, identity=96.43%
	328-467, UI-E-EO0-ahx-h-11-0-UI.r1 UI-E-EO0 Homo sapiens cDNA clone (gb\|BM722420.1\|), blast E-value=0, identity=96.43%
	328-467, UI-E-EJ0-ais-m-04-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM724732.1\|), blast E-value=0, identity=96.43%
	328-467, UI-CF-DU0-aaa-k-02-0-UI.s1 UI-CF-DU0 Homo sapiens cDNA clone (gb\|BU674067.1\|), blast E-value=0, identity=96.43%
	322-467, LB0175.CR_O05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV820358.1\|), blast E-value=0, identity=97.95%

	88-492, gnl\|bosTau2\|chr19 (15378998-15378588)
	88-492, gnl\|Hg17\|chr17 (7698451-7698839)
	88-492, gnl\|Mm7\|chr11 (69480475-69480085)