Ss1.1-Emb1-C0005186_L04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGTGGCGGCCGCGGCTCGAGGTTCTTTTGGAGAACATTTGGGTTTGATTTAAATACC GAGAGTAGAGATTGGCTCGCTCTTTGATTTCACTCTACCTATGTTAAGAGGGAAAGGAAA TTAAATCCTCTAAAGAAATCATCACAAAGGGGAATCATTGTAATGGTAGAAATGGAGGTA TAGAACTATGCAAAGAAAGCAGGAAGTGGAGTATCTCCCTCATCCCTTGAATCTAGTCAT CTGTCCTGGCTTCCAGGTAGGCTTACTAGAAACTTCTGGCTCCTTATGTGAGATTCAGGT GGTAAGCCCTAAGTTTTTCAGATGATAGGTTACTAAAAGCAATGAGGAGTTTATATCCTT TGGTTTCTTTAATACTCATGCAGAGTTCAGAAAGAAATTACTCAGATCTAATTTCTAGTA CTTAAGCCAACACCTAGTTCTAAAATGCTATTTATTTGTGTCTGTAAGTTTGTACATAAT AATACCAACCTCATTTTTGTTGTGGGGGGGGTGGATTTTGTTTTTTGGGTTTTTTTTTTT TTTTTTCCATGAGTTTGAGTTTGGTTTATTTGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGTGGCGGCCGCGGCTCGAGGTTCTTTTGGAGAACATTTGGGTTTGATTTAAATACC GAGAGTAGAGATTGGCTCGCTCTTTGATTTCACTCTACCTATGTTAAGAGGGAAAGGAAA TTAAATCCTCTAAAGAAATCATCACAAAGGGGAATCATTGTAATGGTAGAAATGGAGGTA TAGAACTATGCAAAGAAAGCAGGAAGTGGAGTATCTCCCTCATCCCTTGAATCTAGTCAT CTGTCCTGGCTTCCAGGTAGGCTTACTAGAAACTTCTGGCTCCTTATGTGAGATTCAGGT GGTAAGCCCTAAGTTTTTCAGATGATAGGTTACTAAAAGCAATGAGGAGTTTATATCCTT TGGTTTCTTTAATACTCATGCAGAGTTCAGAAAGAAATTACTCAGATCTAATTTCTAGTA CTTAAGCCAACACCTAGTTCTAAAATGCTATTTATTTGTGTCTGTAAGTTTGTACATAAT AATACCAACCTCATTTTTGTTGTGGGGGGGGTGGATTTTGTTTTTTGGGTTTTTTTTTTT TTTTTTCCATGAGTTTGAGTTTGGTTTATTTGAAAT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 78-213, - strand, RNAz p=0.966923 | |
| 105-223, - strand, RNAz p=0.999016 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 78-213, - strand, RNAz p=0.966923 | |
| 105-223, - strand, RNAz p=0.999016 |
| Similar Transcript(s): 2 entry(ies) | More info |
| Similar Transcript(s): 2 entry(ies) | Help | Less info |
| 105-220, CF--06-R-M24 Bos taurus CF-24-HW cDNA library Bos taurus cDNA clone (gb|CF931266.1|), blast E-value=0.0000000000005, identity=84.62% | |
| 105-220, LB01821.CR_B15 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE223617.1|), blast E-value=0.000000000000002, identity=85.47% |
| Similar Transcript(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 105-220, CF--06-R-M24 Bos taurus CF-24-HW cDNA library Bos taurus cDNA clone (gb|CF931266.1|), blast E-value=0.0000000000005, identity=84.62% | |
| 105-220, LB01821.CR_B15 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE223617.1|), blast E-value=0.000000000000002, identity=85.47% |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 25-246, gnl|bosTau2|chr23 (14309323-14309101) | |
| 25-246, gnl|canFam2|chr12 (12860122-12860844) | |
| 25-246, gnl|dasNov1|scaffold_19596 (4546-3829) | |
| 25-246, gnl|echTel1|scaffold_167993 (6344-5603) | |
| 25-246, gnl|hg17|chr6 (41174579-41175298) | |
| 25-246, gnl|Hg17|chr6 (41174661-41174890) | |
| 25-246, gnl|mm7|chr17 (46532495-46531890) | |
| 25-246, gnl|monDom2|scaffold_42 (2450883-2450080) | |
| 25-246, gnl|panTro1|chr5 (41746750-41747469) | |
| 25-246, gnl|rheMac2|chr4 (40922258-40922969) | |
| 25-246, gnl|rn3|chr9 (7995455-7996099) | |
| 275-543, gnl|bosTau2|chr23 (14309107-14308840) | |
| 275-543, gnl|canFam2|chr12 (12860122-12860844) | |
| 275-543, gnl|dasNov1|scaffold_19596 (4546-3829) | |
| 275-543, gnl|echTel1|scaffold_167993 (6344-5603) | |
| 275-543, gnl|hg17|chr6 (41174579-41175298) | |
| 275-543, gnl|Hg17|chr6 (41174857-41175188) | |
| 275-543, gnl|mm7|chr17 (46532495-46531890) | |
| 275-543, gnl|Mm7|chr17 (46532244-46531973) | |
| 275-543, gnl|monDom2|scaffold_42 (2450883-2450080) | |
| 275-543, gnl|panTro1|chr5 (41746750-41747469) | |
| 275-543, gnl|rheMac2|chr4 (40922258-40922969) | |
| 275-543, gnl|rn3|chr9 (7995455-7996099) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-246, gnl|bosTau2|chr23 (14309323-14309101) | |
| 25-246, gnl|canFam2|chr12 (12860122-12860844) | |
| 25-246, gnl|dasNov1|scaffold_19596 (4546-3829) | |
| 25-246, gnl|echTel1|scaffold_167993 (6344-5603) | |
| 25-246, gnl|hg17|chr6 (41174579-41175298) | |
| 25-246, gnl|Hg17|chr6 (41174661-41174890) | |
| 25-246, gnl|mm7|chr17 (46532495-46531890) | |
| 25-246, gnl|monDom2|scaffold_42 (2450883-2450080) | |
| 25-246, gnl|panTro1|chr5 (41746750-41747469) | |
| 25-246, gnl|rheMac2|chr4 (40922258-40922969) | |
| 25-246, gnl|rn3|chr9 (7995455-7996099) | |
| 275-543, gnl|bosTau2|chr23 (14309107-14308840) | |
| 275-543, gnl|canFam2|chr12 (12860122-12860844) | |
| 275-543, gnl|dasNov1|scaffold_19596 (4546-3829) | |
| 275-543, gnl|echTel1|scaffold_167993 (6344-5603) | |
| 275-543, gnl|hg17|chr6 (41174579-41175298) | |
| 275-543, gnl|Hg17|chr6 (41174857-41175188) | |
| 275-543, gnl|mm7|chr17 (46532495-46531890) | |
| 275-543, gnl|Mm7|chr17 (46532244-46531973) | |
| 275-543, gnl|monDom2|scaffold_42 (2450883-2450080) | |
| 275-543, gnl|panTro1|chr5 (41746750-41747469) | |
| 275-543, gnl|rheMac2|chr4 (40922258-40922969) | |
| 275-543, gnl|rn3|chr9 (7995455-7996099) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.0993246) |