Non-Coding RNA Search

Ss1.1-Emb1-C0005186_N03.5

Sequence:


               
               TCAAGAAGTAAAGATAGAAGGAGGAGGAGGAGAGATTCTCGGAGCTCAGAAAGAGAAGAA
AGTCAAAGCAGAAACAAAGAAAAATACAGAAACCAAGAAGGTAAAAGTTCACACAGAAAA
GAAAATTCCGAAGGTGAGAAGAGAATGTACTCTAAAAATCGTGATCATAGTAGCTCAAAT
AGTAACAGGGAAAAAAAGGCTGATAGAGATCCAAGTCCATTCTCAAAAATGAAACAAAGT
AGTCAGGACAATGAATTAAAGTTCTCTACTTTGAAAAATAAGGAGGATGAAAAGACCAGA
TCCTCAATGGAAGAAGAAAACCAAAAATCAAAGGGTCAAGAAAATGACCACACACATGAT
AAAAATAAAAAATTTGATCATGAATCAAGCCCTGGAACAGATGAAGACAAAAGTGGATGA
GTGAGTTACATAAACTTATTTCCATTCTGTCTCAAATTTTAAGTTTTAGAGACTTGCTGA
TGAATCTCTTTTATGTTGTTTTCTTCTCTTCATTGTTTTGGGGTTATGTTTGTCTTTTTT
TTTTTTTTTTTTTTTTCAATGTGGACTTTATTGAGTTGATCTTTTGATAATCTGCAACCT
GGATAATTTGTACTGCTAAAGTTTTAATAAACTTGAAATGAGAAAAACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGAAGTAAAGATAGAAGGAGGAGGAGGAGAGATTCTCGGAGCTCAGAAAGAGAAGAA
AGTCAAAGCAGAAACAAAGAAAAATACAGAAACCAAGAAGGTAAAAGTTCACACAGAAAA
GAAAATTCCGAAGGTGAGAAGAGAATGTACTCTAAAAATCGTGATCATAGTAGCTCAAAT
AGTAACAGGGAAAAAAAGGCTGATAGAGATCCAAGTCCATTCTCAAAAATGAAACAAAGT
AGTCAGGACAATGAATTAAAGTTCTCTACTTTGAAAAATAAGGAGGATGAAAAGACCAGA
TCCTCAATGGAAGAAGAAAACCAAAAATCAAAGGGTCAAGAAAATGACCACACACATGAT
AAAAATAAAAAATTTGATCATGAATCAAGCCCTGGAACAGATGAAGACAAAAGTGGATGA
GTGAGTTACATAAACTTATTTCCATTCTGTCTCAAATTTTAAGTTTTAGAGACTTGCTGA
TGAATCTCTTTTATGTTGTTTTCTTCTCTTCATTGTTTTGGGGTTATGTTTGTCTTTTTT
TTTTTTTTTTTTTTTTCAATGTGGACTTTATTGAGTTGATCTTTTGATAATCTGCAACCT
GGATAATTTGTACTGCTAAAGTTTTAATAAACTTGAAATGAGAAAAACAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               197-436, - strand, RNAz p=0.979387

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-436, - strand, RNAz p=0.979387

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               361-510, - strand, RNAmicro p=0.979183

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               361-510, - strand, RNAmicro p=0.979183

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               197-436, AM029633 KN-252-lymph, Bos indicus Bos indicus cDNA clone 
(emb|AM029633.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, AM032833 KN-252-spleen, Bos taurus Bos taurus cDNA clone 
(emb|AM032833.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, AM036557 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM036557.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, LB00430.CR_L09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT835456.1|), 
blast E-value=0, identity=91.67% 
               

               
               197-436, LB00430.CR_M14 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT835474.1|), 
blast E-value=0, identity=91.67% 
               

               
               197-436, LB01818.CR_A04 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222826.1|), 
blast E-value=0, identity=91.67%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               197-436, AM029633 KN-252-lymph, Bos indicus Bos indicus cDNA clone 
(emb|AM029633.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, AM032833 KN-252-spleen, Bos taurus Bos taurus cDNA clone 
(emb|AM032833.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, AM036557 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM036557.1|), blast E-value=0, identity=91.67% 
               

               
               197-436, LB00430.CR_L09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT835456.1|), 
blast E-value=0, identity=91.67% 
               

               
               197-436, LB00430.CR_M14 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT835474.1|), 
blast E-value=0, identity=91.67% 
               

               
               197-436, LB01818.CR_A04 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222826.1|), 
blast E-value=0, identity=91.67%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-649, gnl|bosTau2|chr2 (18924551-18925190)
               

               
               1-649, gnl|Hg17|chr2 (170319121-170319761)
               

               
               1-649, gnl|Mm7|chr2 (69680512-69681166)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr2 (18924551-18925190)
               

               
               1-649, gnl|Hg17|chr2 (170319121-170319761)
               

               
               1-649, gnl|Mm7|chr2 (69680512-69681166)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	197-436, AM029633 KN-252-lymph, Bos indicus Bos indicus cDNA clone (emb\|AM029633.1\|), blast E-value=0, identity=91.67%
	197-436, AM032833 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb\|AM032833.1\|), blast E-value=0, identity=91.67%
	197-436, AM036557 KN-252-spleen, Bos indicus Bos indicus cDNA clone (emb\|AM036557.1\|), blast E-value=0, identity=91.67%
	197-436, LB00430.CR_L09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT835456.1\|), blast E-value=0, identity=91.67%
	197-436, LB00430.CR_M14 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT835474.1\|), blast E-value=0, identity=91.67%
	197-436, LB01818.CR_A04 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE222826.1\|), blast E-value=0, identity=91.67%

	1-649, gnl\|bosTau2\|chr2 (18924551-18925190)
	1-649, gnl\|Hg17\|chr2 (170319121-170319761)
	1-649, gnl\|Mm7\|chr2 (69680512-69681166)