Non-Coding RNA Search

Ss1.1-Emb1-C0005188_A22.5

Sequence:


               
               CCCACATACGTAGCAGACACACAATTAAAATGTCAGATTATCCTTAGTTCTAAGGTTGTC
ATTTAAAAGTGAAGTTCCTTTGTGTTTCTGTCCCATCGGTAAAATTGAAGGATATGGGGA
GTCATTGGTTCTCTTCCATCCCGTTTTCCTTTCTGGGCAGGAGCCTAACACAAGTCACGG
TTCTGTGTTCAAAGAAAGCGTTTCTAGAACAGGGGAATGAATTGTTTTCCCACTCACCAT
TAAATTCGGGCAGCTCTGTTAGTGTAACTCTCTCATCAGTGGGTGGGAGAGTGCCCTTGA
GAGAATTGAGCTATTTAGGCAGATTCGGAAAGGTCTGAGGCACCCTCTTGTTTGTGGAGG
CTGCGTGTTTGGGACGGTGCAGAGATTGACGAGGTTCAGGAAGACAGTCCACTCCATCCC
CATGGCAAAGGAATGGGTTAGCCCTAGCATAGAATGTAATTGTTTTCAAAACTGTTTTAT
ATCTTAAGAGTGCCTTATTAAAGTGTAGATTTATTTCTTAAAATGTGGGTGATAGGAAAT
TTAAAGATTTATATAATGCTGCAAAAGCCTTTAGAATACTGTAAGAAAAGGGTTTTTAAA
AATTGGCTTATCTGTATATCTGAACTCTTAAAACTTTCTTATAGCCAAAACACTAGGATT
TATCTGCAGGATTGCAGAGAGAGCTAATCCTGCCTTAAATAGACCGAAACAAAAACAAAA
CCAGCCAATGATACACTTGCTGTTAAAATCTATTTTCCCCCATTTCTTTTACTTTTCTCT
TGCTGCCCACACTGTGCCTTTAGGAGCTCCAGGTTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTAAATTTAGTTGCAAACAATCCAGTTCTAAACATTGGACTTGGGAAGCTGTCATTCTT
AGATTAAAAGTCATGTACTTTTTTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACATACGTAGCAGACACACAATTAAAATGTCAGATTATCCTTAGTTCTAAGGTTGTC
ATTTAAAAGTGAAGTTCCTTTGTGTTTCTGTCCCATCGGTAAAATTGAAGGATATGGGGA
GTCATTGGTTCTCTTCCATCCCGTTTTCCTTTCTGGGCAGGAGCCTAACACAAGTCACGG
TTCTGTGTTCAAAGAAAGCGTTTCTAGAACAGGGGAATGAATTGTTTTCCCACTCACCAT
TAAATTCGGGCAGCTCTGTTAGTGTAACTCTCTCATCAGTGGGTGGGAGAGTGCCCTTGA
GAGAATTGAGCTATTTAGGCAGATTCGGAAAGGTCTGAGGCACCCTCTTGTTTGTGGAGG
CTGCGTGTTTGGGACGGTGCAGAGATTGACGAGGTTCAGGAAGACAGTCCACTCCATCCC
CATGGCAAAGGAATGGGTTAGCCCTAGCATAGAATGTAATTGTTTTCAAAACTGTTTTAT
ATCTTAAGAGTGCCTTATTAAAGTGTAGATTTATTTCTTAAAATGTGGGTGATAGGAAAT
TTAAAGATTTATATAATGCTGCAAAAGCCTTTAGAATACTGTAAGAAAAGGGTTTTTAAA
AATTGGCTTATCTGTATATCTGAACTCTTAAAACTTTCTTATAGCCAAAACACTAGGATT
TATCTGCAGGATTGCAGAGAGAGCTAATCCTGCCTTAAATAGACCGAAACAAAAACAAAA
CCAGCCAATGATACACTTGCTGTTAAAATCTATTTTCCCCCATTTCTTTTACTTTTCTCT
TGCTGCCCACACTGTGCCTTTAGGAGCTCCAGGTTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTAAATTTAGTTGCAAACAATCCAGTTCTAAACATTGGACTTGGGAAGCTGTCATTCTT
AGATTAAAAGTCATGTACTTTTTTTTTTTTTTTTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               5-802, gnl|bosTau2|chr21 (12501585-12500806)
               

               
               5-802, gnl|Hg17|chr15 (88844752-88845524)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-802, gnl|bosTau2|chr21 (12501585-12500806)
               

               
               5-802, gnl|Hg17|chr15 (88844752-88845524)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	5-802, gnl\|bosTau2\|chr21 (12501585-12500806)
	5-802, gnl\|Hg17\|chr15 (88844752-88845524)

	amn (0.417711)
	spl (0.286369)
	cbl (0.229595)
	sag (0.182715)
	sin (0.174948)
	liv (0.146284)
	lin (0.145603)
	pla (0.133672)
	jej (0.0989218)