Non-Coding RNA Search

Ss1.1-Emb1-C0005188_C01.5

Sequence:


               
               CCAGGAAGCCTTGGAAGATCGTTTGGAGAAGATTAATCGAGAGCTGGGTTCAGTTCGCAT
GACATTAAAGAAATTTCATGTTTTACGCACCTCTGCAAATCTTTGAGATTTGTAGCCATT
AAATTTTGAGACTTTTTTTTTGCACTAAAGTATAATTATGCACTCAGAAAAGGCAAACTA
TTTTGTACTGTTTATAAGCCTTCAAACCGTAGTTTTACAATCATGCTATTCTTTACACTT
GCTATTTTATACTCCAAATGGCCACATATTTTCAAGATATTTTTGTTATGCTCAGGAATC
TCTTGTATATTTTACTATTTAAAAAGTATTATTTTTAAATAGTATATGTCTCCAGTTTAT
ATCAAGAATAAGGAAATGTAAACAGGGGAGGCAGCTTGTTTCTAAACAAATAGTGTTATC
CTTTTACAGTTAACTTTGCACACCAATTTTATACACTTGTTCTACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGAAGCCTTGGAAGATCGTTTGGAGAAGATTAATCGAGAGCTGGGTTCAGTTCGCAT
GACATTAAAGAAATTTCATGTTTTACGCACCTCTGCAAATCTTTGAGATTTGTAGCCATT
AAATTTTGAGACTTTTTTTTTGCACTAAAGTATAATTATGCACTCAGAAAAGGCAAACTA
TTTTGTACTGTTTATAAGCCTTCAAACCGTAGTTTTACAATCATGCTATTCTTTACACTT
GCTATTTTATACTCCAAATGGCCACATATTTTCAAGATATTTTTGTTATGCTCAGGAATC
TCTTGTATATTTTACTATTTAAAAAGTATTATTTTTAAATAGTATATGTCTCCAGTTTAT
ATCAAGAATAAGGAAATGTAAACAGGGGAGGCAGCTTGTTTCTAAACAAATAGTGTTATC
CTTTTACAGTTAACTTTGCACACCAATTTTATACACTTGTTCTACATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-397, + strand, RNAz p=0.983725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-397, + strand, RNAz p=0.983725

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               199-397, DB518885 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB518885.2|), blast E-value=0, identity=95.48% 
               

               
               199-397, DB535268 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB535268.2|), blast E-value=0, identity=95.48% 
               

               
               199-397, AM004978 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007388d12 
(emb|AM004978.1|), blast E-value=0, identity=95.98% 
               

               
               199-397, DKFZp459A063_r1 459 (synonym (emb|CR536997.1|), blast E-value=0, 
identity=96.48% 
               

               
               199-397, DKFZp459A247_r1 459 (synonym (emb|CR538424.1|), blast E-value=0, 
identity=96.48% 
               

               
               199-397, CH3#039_B12T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF413467.1|), blast E-value=0, identity=95.98%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               199-397, DB518885 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB518885.2|), blast E-value=0, identity=95.48% 
               

               
               199-397, DB535268 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB535268.2|), blast E-value=0, identity=95.48% 
               

               
               199-397, AM004978 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007388d12 
(emb|AM004978.1|), blast E-value=0, identity=95.98% 
               

               
               199-397, DKFZp459A063_r1 459 (synonym (emb|CR536997.1|), blast E-value=0, 
identity=96.48% 
               

               
               199-397, DKFZp459A247_r1 459 (synonym (emb|CR538424.1|), blast E-value=0, 
identity=96.48% 
               

               
               199-397, CH3#039_B12T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF413467.1|), blast E-value=0, identity=95.98%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK023016, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK023016, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-468, gnl|bosTau2|chr17 (26266053-26265588)
               

               
               1-468, gnl|Hg17|chr12 (122166339-122165874)
               

               
               1-468, gnl|Mm7|chr5 (123500985-123500519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr17 (26266053-26265588)
               

               
               1-468, gnl|Hg17|chr12 (122166339-122165874)
               

               
               1-468, gnl|Mm7|chr5 (123500985-123500519)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	199-397, DB518885 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB518885.2\|), blast E-value=0, identity=95.48%
	199-397, DB535268 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB535268.2\|), blast E-value=0, identity=95.48%
	199-397, AM004978 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007388d12 (emb\|AM004978.1\|), blast E-value=0, identity=95.98%
	199-397, DKFZp459A063_r1 459 (synonym (emb\|CR536997.1\|), blast E-value=0, identity=96.48%
	199-397, DKFZp459A247_r1 459 (synonym (emb\|CR538424.1\|), blast E-value=0, identity=96.48%
	199-397, CH3#039_B12T3 Canine heart normalized cDNA Library in pBluescript (gb\|CF413467.1\|), blast E-value=0, identity=95.98%

	1-468, gnl\|bosTau2\|chr17 (26266053-26265588)
	1-468, gnl\|Hg17\|chr12 (122166339-122165874)
	1-468, gnl\|Mm7\|chr5 (123500985-123500519)