Non-Coding RNA Search

Ss1.1-Emb1-C0005189_C17.5

Sequence:


               
               GCCTAGAAGTCCTTTAAAAAAGCACTTGCATCACTGTCTTCCGATTTTTTCTTTTTAAGT
CAATTGTGATTTGAAACAAAATGAAAATGAGCCAGACATTCGAAAAAGATCTTGGATACA
AATTAAGAACTTTATCTTAAACAAAATAGAGAGTAAATTGGAGAAAAATGAATTTAGCTT
GCATTTTAACCTCTATGAAGAGCACAGAAGGTAGGAGAAGGCAGTCCGTGTTTCTGATGC
CTTTAGGCATCACATGGGGAAATACTGTCTCCGTTTGGGAAAAGAAAAAGTGAAATCCTG
TTTATGTAGGAGTCTACATGTAGAGTTTTTTCCCAAAGCCATTTCAATTGTATTTATGAG
GTGGTTTTGTTTTTTATCATCTCATTGTATGTTTTAAGTGCCTTTTTATATAAAGTGTGA
ACTTCTAGAGTTTCAAGAGTATATAAGACTAAGTGGCATTGTATTTTTATAACCTCACTA
AGAAGACTAAGAAATGAAATACCATACCAATTTTTACTTTTTTTATGCTTCAAACAATAA
AGACGTTTTACATTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTAGAAGTCCTTTAAAAAAGCACTTGCATCACTGTCTTCCGATTTTTTCTTTTTAAGT
CAATTGTGATTTGAAACAAAATGAAAATGAGCCAGACATTCGAAAAAGATCTTGGATACA
AATTAAGAACTTTATCTTAAACAAAATAGAGAGTAAATTGGAGAAAAATGAATTTAGCTT
GCATTTTAACCTCTATGAAGAGCACAGAAGGTAGGAGAAGGCAGTCCGTGTTTCTGATGC
CTTTAGGCATCACATGGGGAAATACTGTCTCCGTTTGGGAAAAGAAAAAGTGAAATCCTG
TTTATGTAGGAGTCTACATGTAGAGTTTTTTCCCAAAGCCATTTCAATTGTATTTATGAG
GTGGTTTTGTTTTTTATCATCTCATTGTATGTTTTAAGTGCCTTTTTATATAAAGTGTGA
ACTTCTAGAGTTTCAAGAGTATATAAGACTAAGTGGCATTGTATTTTTATAACCTCACTA
AGAAGACTAAGAAATGAAATACCATACCAATTTTTACTTTTTTTATGCTTCAAACAATAA
AGACGTTTTACATTAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-562, gnl|bosTau2|chr5 (12688605-12689117)
               

               
               51-562, gnl|Hg17|chr12 (88316488-88315963)
               

               
               51-562, gnl|Mm7|chr10 (98758986-98759478)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-562, gnl|bosTau2|chr5 (12688605-12689117)
               

               
               51-562, gnl|Hg17|chr12 (88316488-88315963)
               

               
               51-562, gnl|Mm7|chr10 (98758986-98759478)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               lyg (0.133103)

	51-562, gnl\|bosTau2\|chr5 (12688605-12689117)
	51-562, gnl\|Hg17\|chr12 (88316488-88315963)
	51-562, gnl\|Mm7\|chr10 (98758986-98759478)