Non-Coding RNA Search

Ss1.1-Emb1-C0005189_H23.5

Sequence:


               
               GTAAAAATTGCGTGTGAGCTTTTTACAAAAGGGTAAGAATTATGGTGTTGAATTTTAATT
CACTTGTATAAGAAAGAAGTTTAGAACTCTCATAATAGGTCTTAAATATTTTTACTTGCT
CTTTCTCCCTCAGTAATATATACCTCTTCCTTCCCTGCTTAATGAAACATCTATGTAAGA
GTTAAAGGAAGTAATCAGTGATCACAGTTTGGAGACAAAATTTGACCCAGGAATGGATAT
TTATTTTAATTAGGTTTTCAGACTCATTAAATGCAGTTTAAAGGTTTGGGTCTCATCTGA
GTGGAGCAGAATTAAAATGACAACTTCAACTTTCTTACAGAAAAATTGTTTCTTTTAATC
CTACACCTTAAAAAGAAACCCCGAAGTGGCTCCTCAGGAATACGTTTTTGTTTTGTTTTG
TTTTGTTTTTGTTTTTGTTTTGCACAAAGGTACCATCTAGCTGAAATTTTATGCATATGA
ATAGATACAAATCTTTTTCCTGTTGGGCTGAAGTGTATGCTTATATATGTGTTTAGGCTC
TTTAAGCTAAACAAACATTTAAATAACATTCTGTGCATTGATTGAAGCATTGGGCAGGTA
GTGAGGACCTGGACTTTTATTGAACAATTTAGTAATTATAAAAATTTCTTGTGTTTACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAAATTGCGTGTGAGCTTTTTACAAAAGGGTAAGAATTATGGTGTTGAATTTTAATT
CACTTGTATAAGAAAGAAGTTTAGAACTCTCATAATAGGTCTTAAATATTTTTACTTGCT
CTTTCTCCCTCAGTAATATATACCTCTTCCTTCCCTGCTTAATGAAACATCTATGTAAGA
GTTAAAGGAAGTAATCAGTGATCACAGTTTGGAGACAAAATTTGACCCAGGAATGGATAT
TTATTTTAATTAGGTTTTCAGACTCATTAAATGCAGTTTAAAGGTTTGGGTCTCATCTGA
GTGGAGCAGAATTAAAATGACAACTTCAACTTTCTTACAGAAAAATTGTTTCTTTTAATC
CTACACCTTAAAAAGAAACCCCGAAGTGGCTCCTCAGGAATACGTTTTTGTTTTGTTTTG
TTTTGTTTTTGTTTTTGTTTTGCACAAAGGTACCATCTAGCTGAAATTTTATGCATATGA
ATAGATACAAATCTTTTTCCTGTTGGGCTGAAGTGTATGCTTATATATGTGTTTAGGCTC
TTTAAGCTAAACAAACATTTAAATAACATTCTGTGCATTGATTGAAGCATTGGGCAGGTA
GTGAGGACCTGGACTTTTATTGAACAATTTAGTAATTATAAAAATTTCTTGTGTTTACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-387, - strand, RNAz p=0.989877

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-387, - strand, RNAz p=0.989877

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-412, gnl|bosTau2|chr10 (64218830-64218426)
               

               
               1-412, gnl|Hg17|chr14 (80715903-80715495)
               

               
               1-412, gnl|Mm7|chr12 (89040458-89040062)
               


               
               435-660, gnl|bosTau2|chr10 (64218432-64218215)
               

               
               435-660, gnl|canFam2|chr8 (56560673-56560883)
               

               
               435-660, gnl|dasNov1|scaffold_1218 (38529-38316)
               

               
               435-660, gnl|echTel1|scaffold_322450 (59583-59789)
               

               
               435-660, gnl|galGal2|chr5 (37651348-37651574)
               

               
               435-660, gnl|hg17|chr14 (80715216-80715421)
               

               
               435-660, gnl|Hg17|chr14 (80715501-80715286)
               

               
               435-660, gnl|loxAfr1|scaffold_1149 (93574-93770)
               

               
               435-660, gnl|mm7|chr12 (89039787-89039988)
               

               
               435-660, gnl|Mm7|chr12 (89040068-89039857)
               

               
               435-660, gnl|monDom2|scaffold_8 (50985220-50985010)
               

               
               435-660, gnl|oryCun1|scaffold_179608 (10287-10482)
               

               
               435-660, gnl|panTro1|chr15 (80819017-80819225)
               

               
               435-660, gnl|rheMac2|chr7 (144369319-144369524)
               

               
               435-660, gnl|rn3|chr6 (115183310-115183515)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-412, gnl|bosTau2|chr10 (64218830-64218426)
               

               
               1-412, gnl|Hg17|chr14 (80715903-80715495)
               

               
               1-412, gnl|Mm7|chr12 (89040458-89040062)
               


               
               435-660, gnl|bosTau2|chr10 (64218432-64218215)
               

               
               435-660, gnl|canFam2|chr8 (56560673-56560883)
               

               
               435-660, gnl|dasNov1|scaffold_1218 (38529-38316)
               

               
               435-660, gnl|echTel1|scaffold_322450 (59583-59789)
               

               
               435-660, gnl|galGal2|chr5 (37651348-37651574)
               

               
               435-660, gnl|hg17|chr14 (80715216-80715421)
               

               
               435-660, gnl|Hg17|chr14 (80715501-80715286)
               

               
               435-660, gnl|loxAfr1|scaffold_1149 (93574-93770)
               

               
               435-660, gnl|mm7|chr12 (89039787-89039988)
               

               
               435-660, gnl|Mm7|chr12 (89040068-89039857)
               

               
               435-660, gnl|monDom2|scaffold_8 (50985220-50985010)
               

               
               435-660, gnl|oryCun1|scaffold_179608 (10287-10482)
               

               
               435-660, gnl|panTro1|chr15 (80819017-80819225)
               

               
               435-660, gnl|rheMac2|chr7 (144369319-144369524)
               

               
               435-660, gnl|rn3|chr6 (115183310-115183515)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	1-412, gnl\|bosTau2\|chr10 (64218830-64218426)
	1-412, gnl\|Hg17\|chr14 (80715903-80715495)
	1-412, gnl\|Mm7\|chr12 (89040458-89040062)

	435-660, gnl\|bosTau2\|chr10 (64218432-64218215)
	435-660, gnl\|canFam2\|chr8 (56560673-56560883)
	435-660, gnl\|dasNov1\|scaffold_1218 (38529-38316)
	435-660, gnl\|echTel1\|scaffold_322450 (59583-59789)
	435-660, gnl\|galGal2\|chr5 (37651348-37651574)
	435-660, gnl\|hg17\|chr14 (80715216-80715421)
	435-660, gnl\|Hg17\|chr14 (80715501-80715286)
	435-660, gnl\|loxAfr1\|scaffold_1149 (93574-93770)
	435-660, gnl\|mm7\|chr12 (89039787-89039988)
	435-660, gnl\|Mm7\|chr12 (89040068-89039857)
	435-660, gnl\|monDom2\|scaffold_8 (50985220-50985010)
	435-660, gnl\|oryCun1\|scaffold_179608 (10287-10482)
	435-660, gnl\|panTro1\|chr15 (80819017-80819225)
	435-660, gnl\|rheMac2\|chr7 (144369319-144369524)
	435-660, gnl\|rn3\|chr6 (115183310-115183515)