Non-Coding RNA Search

Ss1.1-Emb1-C0005189_O06.5

Sequence:


               
               GTGATATGTGTAGATGAAAATAACTCTAAGGAAGAAAATGTGCAAGTGGCAGACAGGCCT
GTGGAATGCATTGTCGAGGAAGCCTGTATCGATTTAACCTCTGAAACTCCCAGTTTGAGT
GAAGTCAAAAAGGATGATTTAAAATCAGAGTTGGTGTCAAATTCTGATAGTCTGGAGTTG
CCTGGGGCTTTGGATAATGCTCACAAAAAGAGAAAAAACCTTTCTGATCTAAATCGTTCT
TCTCAGAAAAAACAGAAGAAGGAAACAGACTTGACCGTTAGGGAAAAGACCAAAAAAATT
ACCCAAGATTCTGGTGAGAATGATGAAGCTCACCAGAGGAAAGCCAAGAAGAAAAAGGCC
CCAGAAGTGATTAAAGATCCCTCATCATTAAAGGCAAGCCCAGGGACTAAGGATGCATCA
GCAGCACCTGCCACTTCTCTCACAAGTCTTTCTGCAAAGAATGTTATTAAAAAGAAGGGA
GAAATTATAGTTTTGTGGACAAGAAATGATGACCGGGAAATCTTATTGGAGTGTCAGAAA
AGAGGGCCATCATTGAAAACATTTTCTTATTTAGCTGCCAAGTTGAATAAAAATCCATAT
CAGGTCTCAGAAAGATTCCAGCAGCTAATGAAGCTTTTTGAAAAGTCAAAATGCAGATAA
ATTGCTGAATTCCTTGGAGTCTTACTTGATATTGCATACTGCACAGAAGCTTGGAATTCC
TCATGTTTTTAATGGGGAAGTAGAGGACAGTTTTATGACATATTCTATTAATATTCTGTT
AATAATCTGCATTTGTTTTTACTTGCTGACTCTTAATCTCAAGCCAGCATGTTCAGCTTG
TTCCTAACATCAGTCTGATTTGTGTAGCTGTTATTGGTCACAATATTTATTTTTAAACAA
ATTAGAACTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATATGTGTAGATGAAAATAACTCTAAGGAAGAAAATGTGCAAGTGGCAGACAGGCCT
GTGGAATGCATTGTCGAGGAAGCCTGTATCGATTTAACCTCTGAAACTCCCAGTTTGAGT
GAAGTCAAAAAGGATGATTTAAAATCAGAGTTGGTGTCAAATTCTGATAGTCTGGAGTTG
CCTGGGGCTTTGGATAATGCTCACAAAAAGAGAAAAAACCTTTCTGATCTAAATCGTTCT
TCTCAGAAAAAACAGAAGAAGGAAACAGACTTGACCGTTAGGGAAAAGACCAAAAAAATT
ACCCAAGATTCTGGTGAGAATGATGAAGCTCACCAGAGGAAAGCCAAGAAGAAAAAGGCC
CCAGAAGTGATTAAAGATCCCTCATCATTAAAGGCAAGCCCAGGGACTAAGGATGCATCA
GCAGCACCTGCCACTTCTCTCACAAGTCTTTCTGCAAAGAATGTTATTAAAAAGAAGGGA
GAAATTATAGTTTTGTGGACAAGAAATGATGACCGGGAAATCTTATTGGAGTGTCAGAAA
AGAGGGCCATCATTGAAAACATTTTCTTATTTAGCTGCCAAGTTGAATAAAAATCCATAT
CAGGTCTCAGAAAGATTCCAGCAGCTAATGAAGCTTTTTGAAAAGTCAAAATGCAGATAA
ATTGCTGAATTCCTTGGAGTCTTACTTGATATTGCATACTGCACAGAAGCTTGGAATTCC
TCATGTTTTTAATGGGGAAGTAGAGGACAGTTTTATGACATATTCTATTAATATTCTGTT
AATAATCTGCATTTGTTTTTACTTGCTGACTCTTAATCTCAAGCCAGCATGTTCAGCTTG
TTCCTAACATCAGTCTGATTTGTGTAGCTGTTATTGGTCACAATATTTATTTTTAAACAA
ATTAGAACTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27769304|gb|AAH42577.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27769304|gb|AAH42577.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, - strand, RNAz p=0.963521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.963521

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-503, gnl|bosTau2|chr9 (33191454-33190952)
               

               
               1-503, gnl|Hg17|chr6 (90635026-90635522)
               

               
               1-503, gnl|Mm7|chr4 (32924566-32925065)
               


               
               654-910, gnl|bosTau2|chr9 (33187093-33186842)
               

               
               654-910, gnl|Hg17|chr6 (90640243-90640494)
               

               
               654-910, gnl|Mm7|chr4 (32931076-32931306)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr9 (33191454-33190952)
               

               
               1-503, gnl|Hg17|chr6 (90635026-90635522)
               

               
               1-503, gnl|Mm7|chr4 (32924566-32925065)
               


               
               654-910, gnl|bosTau2|chr9 (33187093-33186842)
               

               
               654-910, gnl|Hg17|chr6 (90640243-90640494)
               

               
               654-910, gnl|Mm7|chr4 (32931076-32931306)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-503, gnl\|bosTau2\|chr9 (33191454-33190952)
	1-503, gnl\|Hg17\|chr6 (90635026-90635522)
	1-503, gnl\|Mm7\|chr4 (32924566-32925065)

	654-910, gnl\|bosTau2\|chr9 (33187093-33186842)
	654-910, gnl\|Hg17\|chr6 (90640243-90640494)
	654-910, gnl\|Mm7\|chr4 (32931076-32931306)