Non-Coding RNA Search

Ss1.1-Emb1-C0005190_M04.5

Sequence:


               
               GCCACGAGGCTTTGCCCGGGGGTCGGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAG
TGGAGAACTCATGTTCCTGATGAAATGGAAAAACTCTGATGAGGCTGACCTAGTCCCTGC
CAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTCATTTCTGTATTCAATAGTTAAGGGTA
AACTTTTCTTAAGAAGTTGTTGAAGCCACTAATGATGCCAATGTTAAGGGGGAAAAGGCA
CAACAAATCTTGCCTGCCTCAGCAAAGTATTCAGAGAGCATTTCTTCAGGCAGTGCAAAA
ACATGTTTGTTGGATGTCTTCAATCATCATCATAAACCTCCAGCCCAGGAGTTGAAGAGG
AGACCCAGGTTGTTACCTTCGTTACCATTAGAGAAGAACCGGAGCTCACTAATTTGGTGT
CAGAATCATCAGAACCTCTCCTTCACTGCCTTCGGCTGAGTTGCAAGTTGGTACAGTAAG
TGGACGATATAATGACTACAGGAATAATAACAAGCGACAGTGCTCAGAACAATTGTGTCT
GCTTTTCTGCATTTGAAAGTCTGTCTGGTTTTTGTTTGTTTTCCCACCCCTGGCATACGT
TGTTCGCAGGCCAGGGATCAGATCCAAGCATCCTAAGGCATAGGTGCT------------
------------------------------------------------------------
------------------------AAGTTTTGACTACCAATTATAAATAATGTCTAATAG
TTGAGTTTTATGTGCTTATTTTCAAATACAAGCTTATATTCAGAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGAGGCTTTGCCCGGGGGTCGGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAG
TGGAGAACTCATGTTCCTGATGAAATGGAAAAACTCTGATGAGGCTGACCTAGTCCCTGC
CAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTCATTTCTGTATTCAATAGTTAAGGGTA
AACTTTTCTTAAGAAGTTGTTGAAGCCACTAATGATGCCAATGTTAAGGGGGAAAAGGCA
CAACAAATCTTGCCTGCCTCAGCAAAGTATTCAGAGAGCATTTCTTCAGGCAGTGCAAAA
ACATGTTTGTTGGATGTCTTCAATCATCATCATAAACCTCCAGCCCAGGAGTTGAAGAGG
AGACCCAGGTTGTTACCTTCGTTACCATTAGAGAAGAACCGGAGCTCACTAATTTGGTGT
CAGAATCATCAGAACCTCTCCTTCACTGCCTTCGGCTGAGTTGCAAGTTGGTACAGTAAG
TGGACGATATAATGACTACAGGAATAATAACAAGCGACAGTGCTCAGAACAATTGTGTCT
GCTTTTCTGCATTTGAAAGTCTGTCTGGTTTTTGTTTGTTTTCCCACCCCTGGCATACGT
TGTTCGCAGGCCAGGGATCAGATCCAAGCATCCTAAGGCATAGGTGCT------------
------------------------------------------------------------
------------------------AAGTTTTGACTACCAATTATAAATAATGTCTAATAG
TTGAGTTTTATGTGCTTATTTTCAAATACAAGCTTATATTCAGAACTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47169035|pdb|1S4Z|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47169035|pdb|1S4Z|B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, + strand, RNAz p=0.611525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.611525

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-159, gnl|bosTau2|chr14 (21286315-21286158)
               

               
               1-159, gnl|Hg17|chrX (62302246-62302090)
               

               
               1-159, gnl|Mm7|chr11 (96911775-96915726)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr14 (21286315-21286158)
               

               
               1-159, gnl|Hg17|chrX (62302246-62302090)
               

               
               1-159, gnl|Mm7|chr11 (96911775-96915726)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-159, gnl\|bosTau2\|chr14 (21286315-21286158)
	1-159, gnl\|Hg17\|chrX (62302246-62302090)
	1-159, gnl\|Mm7\|chr11 (96911775-96915726)