Ss1.1-Emb1-C0005191_H03.5
|
CGGGAGCGGCGGCCTCGCCGCAGAGGGCCAAGATGTCGGCGGCAGCGGCGGCTTCCCTTC
GCGGGGCGGTGCTGGGCCCGCGGGGTGCGGGGCTGCCGGGCGCGCGGGCGCGGGGTCTAC
TATGCGGCCCGCGGCCCGGGCAACTCCCACTGCGGACACCTCAGGCGTTATCCTTGTCGT
CGAAGTCTGGCCTGTCCCGGGGGCGGAAAGTGATTCTGTCCGCGTTGGGCATGCTGGCGG
CAGGGGGTGCAGGGCTGGCCGTGGCTCTGCATTCGGCCGTGAGTGCCACTGACCTGGAGC
TGCACGCCCCCAGCTATCCGTGGTCTCACCGCGGCCTCCTCTCATCCCTGGACCACACCA
GCATCCGGAGGGGTTTCCAGGTATACAAGCAGGTGTGCTCCTCCTGCCACAGCATGGACT
ACGTGGCCTACCGCCACCTGGTGGGCGTGTGCTACACCGAGGAGGAAGCTAAGGCCCTGG
CTGAGGAGGTGGAGGTTCAAGACGGCCCCAATGAGGATGGGGAGATGTTCATGCGGCCAG
GAAAGCTGTCTGACTACTTCCCCAAACCATACCCCAACCCCGAGGCTGCTCGAGCGGCCA
ACAACGGAGCACTGCCCCCTGACCTCAGCTACATCGTGCGAGCTAGGCACGGTGGTGAGG
ACTACGTCTTCTCCCTGCTCACGGGCTACTGTGAGCCGCCCACTGGAGTGTCGCTGCGAG
AAGGCCTCTACTTCAACCCCTACTTTCCTGGCCAGGCCATAGCCATGGCCCCGCCCATCT
ACAACGAAGTCTTGGAGTTTGACGATGGCACCCCAGCTACCATGTCCCAGGTAGCCAAGG
ACGTGTGTACTTTCCTGCGCTGGGCATCTGAACCCGAACACGACCATCGCAAACGCATGG
GGCTCAAGATGCTGATGATGATGGGCTTGCTTTTGCCCCTCGTCTACGCCATGAAGCGGC
ATAAGTGGTCAGTCCTCAAGAGCCGGAAACTGGCCTATCGACCGCCCAAGTGACCCTGCC
TGCTGTGTGCTTGCTGTCCTGCCTGACCGCGTCAGGTCCTCAGGCCAAGGAGCCACCTTG
GACCTGTGCAGGTCTCGGCTGGCCCTCTTGGCCAAGCCCCCCTTCCTCTGGGACAAGAGG
GAAAGGGGCGCGGAAGGTTCTAGCTCCAGATGGTTCGGCACTCATCGTGGAAATAAATTA
AGTTTCTCAACAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGGAGCGGCGGCCTCGCCGCAGAGGGCCAAGATGTCGGCGGCAGCGGCGGCTTCCCTTC
GCGGGGCGGTGCTGGGCCCGCGGGGTGCGGGGCTGCCGGGCGCGCGGGCGCGGGGTCTAC
TATGCGGCCCGCGGCCCGGGCAACTCCCACTGCGGACACCTCAGGCGTTATCCTTGTCGT
CGAAGTCTGGCCTGTCCCGGGGGCGGAAAGTGATTCTGTCCGCGTTGGGCATGCTGGCGG
CAGGGGGTGCAGGGCTGGCCGTGGCTCTGCATTCGGCCGTGAGTGCCACTGACCTGGAGC
TGCACGCCCCCAGCTATCCGTGGTCTCACCGCGGCCTCCTCTCATCCCTGGACCACACCA
GCATCCGGAGGGGTTTCCAGGTATACAAGCAGGTGTGCTCCTCCTGCCACAGCATGGACT
ACGTGGCCTACCGCCACCTGGTGGGCGTGTGCTACACCGAGGAGGAAGCTAAGGCCCTGG
CTGAGGAGGTGGAGGTTCAAGACGGCCCCAATGAGGATGGGGAGATGTTCATGCGGCCAG
GAAAGCTGTCTGACTACTTCCCCAAACCATACCCCAACCCCGAGGCTGCTCGAGCGGCCA
ACAACGGAGCACTGCCCCCTGACCTCAGCTACATCGTGCGAGCTAGGCACGGTGGTGAGG
ACTACGTCTTCTCCCTGCTCACGGGCTACTGTGAGCCGCCCACTGGAGTGTCGCTGCGAG
AAGGCCTCTACTTCAACCCCTACTTTCCTGGCCAGGCCATAGCCATGGCCCCGCCCATCT
ACAACGAAGTCTTGGAGTTTGACGATGGCACCCCAGCTACCATGTCCCAGGTAGCCAAGG
ACGTGTGTACTTTCCTGCGCTGGGCATCTGAACCCGAACACGACCATCGCAAACGCATGG
GGCTCAAGATGCTGATGATGATGGGCTTGCTTTTGCCCCTCGTCTACGCCATGAAGCGGC
ATAAGTGGTCAGTCCTCAAGAGCCGGAAACTGGCCTATCGACCGCCCAAGTGACCCTGCC
TGCTGTGTGCTTGCTGTCCTGCCTGACCGCGTCAGGTCCTCAGGCCAAGGAGCCACCTTG
GACCTGTGCAGGTCTCGGCTGGCCCTCTTGGCCAAGCCCCCCTTCCTCTGGGACAAGAGG
GAAAGGGGCGCGGAAGGTTCTAGCTCCAGATGGTTCGGCACTCATCGTGGAAATAAATTA
AGTTTCTCAACAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
154-361, gnl|bosTau2|chr14 (142523-142315) |
|
154-361, gnl|Hg17|chr8 (145222712-145222920) |
|
154-361, gnl|Mm7|chr15 (76426843-76427051) |
| |
|
487-657, gnl|bosTau2|chr14 (142022-141852) |
|
487-657, gnl|canFam2|chr13 (40622690-40622853) |
|
487-657, gnl|danRer3|chrUn (20036279-20036117) |
|
487-657, gnl|dasNov1|scaffold_164998 (3604-3767) |
|
487-657, gnl|echTel1|scaffold_293656 (1325-1488) |
|
487-657, gnl|fr1|chrUn (324914880-324915043) |
|
487-657, gnl|hg17|chr8 (145223225-145223388) |
|
487-657, gnl|Hg17|chr8 (145223226-145223397) |
|
487-657, gnl|mm7|chr15 (76427362-76427525) |
|
487-657, gnl|Mm7|chr15 (76427363-76427534) |
|
487-657, gnl|monDom2|scaffold_79 (2330570-2330733) |
|
487-657, gnl|oryCun1|scaffold_170830 (3291-3454) |
|
487-657, gnl|panTro1|chr7 (148531231-148531394) |
|
487-657, gnl|rheMac2|chr8 (146710784-146710947) |
|
487-657, gnl|rn3|chr7 (114429662-114429825) |
|
487-657, gnl|tetNig1|chrUn_random (11810916-11810753) |
| |
|
907-1212, gnl|bosTau2|chr14 (141017-140715) |
|
907-1212, gnl|Hg17|chr8 (145224121-145224414) |
|
907-1212, gnl|Mm7|chr15 (76428206-76428486) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
154-361, gnl|bosTau2|chr14 (142523-142315) |
|
154-361, gnl|Hg17|chr8 (145222712-145222920) |
|
154-361, gnl|Mm7|chr15 (76426843-76427051) |
| |
|
487-657, gnl|bosTau2|chr14 (142022-141852) |
|
487-657, gnl|canFam2|chr13 (40622690-40622853) |
|
487-657, gnl|danRer3|chrUn (20036279-20036117) |
|
487-657, gnl|dasNov1|scaffold_164998 (3604-3767) |
|
487-657, gnl|echTel1|scaffold_293656 (1325-1488) |
|
487-657, gnl|fr1|chrUn (324914880-324915043) |
|
487-657, gnl|hg17|chr8 (145223225-145223388) |
|
487-657, gnl|Hg17|chr8 (145223226-145223397) |
|
487-657, gnl|mm7|chr15 (76427362-76427525) |
|
487-657, gnl|Mm7|chr15 (76427363-76427534) |
|
487-657, gnl|monDom2|scaffold_79 (2330570-2330733) |
|
487-657, gnl|oryCun1|scaffold_170830 (3291-3454) |
|
487-657, gnl|panTro1|chr7 (148531231-148531394) |
|
487-657, gnl|rheMac2|chr8 (146710784-146710947) |
|
487-657, gnl|rn3|chr7 (114429662-114429825) |
|
487-657, gnl|tetNig1|chrUn_random (11810916-11810753) |
| |
|
907-1212, gnl|bosTau2|chr14 (141017-140715) |
|
907-1212, gnl|Hg17|chr8 (145224121-145224414) |
|
907-1212, gnl|Mm7|chr15 (76428206-76428486) |
|
hlv (1.53182) |
|
nms (0.855432) |
|
amn (0.835422) |
|
fhi (0.678311) |
|
nco (0.646935) |
|
mas (0.630915) |
|
cov (0.528611) |
|
ton (0.526501) |
|
cag (0.453583) |
|
hyp (0.42851) |
|
col (0.390016) |
|
nep (0.36785) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
nje (0.33184) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
cly (0.241284) |
|
clu (0.239292) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
cbr (0.127975) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
eje (0.0988338) |
|
hlv (1.53182) |
|
nms (0.855432) |
|
amn (0.835422) |
|
fhi (0.678311) |
|
nco (0.646935) |
|
mas (0.630915) |
|
cov (0.528611) |
|
ton (0.526501) |
|
cag (0.453583) |
|
hyp (0.42851) |
|
col (0.390016) |
|
nep (0.36785) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
nje (0.33184) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
cly (0.241284) |
|
clu (0.239292) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
cbr (0.127975) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
eje (0.0988338) |
