Non-Coding RNA Search

Ss1.1-Emb1-C0005191_I21.5

Sequence:


               
               CCATCCGAGAACAGTTTTTTGAAATCCCGATGCCTTCTATCATACTGAAGCTGAAAGAAC
CACACACGATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGACATTTTATTAATGA
GGAAAGCTTTGTTTGACCATCTCACTGCCCGAGGCATTCAGGTGTATATTTGGGTATTAA
ATGAAGAGCAGGAATACAAAAGAGCTTTTGATTTGGGAGCAACCGGGGTGATGACAGACT
ATCCAACAAAGCTTAAGGATTTTTTACATAATGTTTCAGAATAGAAAAGAAGCTACTCAG
AAGCATTTCAAGAAAATATGAAAAGACTAAGAAAAAAAAAATTTCACTCTTTCCCTAAGC
CATTTCCAGAATGGTAAAAGGTTTAATCAGTTAAGTTTTTATTACCTCATTTTTAAGCCT
GTCTGAGAATGTAGAAACTATATATTGTATATTTATTTTAAATAATATTGCATATTTTAC
ATTTGTAAATTGTTTAGAAAGATAACTGGCTATGAGATGTGCGTAGACTATTGATCAAGA
TTTCTGTATGTGATGCTATATTCTACTATTATAAGTAATTCTGAAATCAAAGACTATTGG
ATAAACTTGACACTAGCCTTCACTGGAATAAGTCAACTAAGTAGTAAGACAGAATTACTG
AAGGCCATTACAGCTATCTGAGTTGTCTTGGTATCTCTAGGTACATCTTAGTTAAAGGGG
AAATTTCATACAATGGAAGGAGAGCTTGGAAATCAGTGATGTAACATCTGACAAGATGTA
TGTTGTTAACAGAAAGCAGACTCAAAGAAATAAGTGAAAGTTTATTACATGATCAGAAAT
AAAATCTGTAGATTGAATTAGGACTTCTTGGTTTCTGCTGTGAATAAGGACATTCCATCT
GGAATCTTTTTCAGGTGTATAACAATGCTACCGTGTCTTTTTTGTTGTTATGAACATTAA
AATTGGACTTAATAATTGTAAATTAAGACAAGATGCAAATGGTCACATTTTTGTTTCCTC
TAAAGAAATGTACATTTTCCATTTTTTTTTGGCAATGACTAACTGTTTGGGCCTACATCT
TAAATAACATCTTGAATTCTAATAATCATATGAAACTGATAAAAGTGCATATCATGGTTT
CTAACACTGAGAGTATAAACCACCTGCTCCTGACCTTTGAGAATTTGTTCTTCTGAGTAT
TAGGTGGAAGCAGAATTTCCCAAAGCATTAGACATCACTTTCTCAGCCTTTCTGATGGGA
CTTCATGTAAATCTGTTTCTCATCTTTTTGACTTATTTTCATTATCTCTTTGGGAGTAAA
TATAAGCTGGACTAATAAGCATCTTAAACCTCGATCTCTCATTTGGAGTTTGCCAGCTAA
CAGCTAGAAAGGATGTTCATACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCCGAGAACAGTTTTTTGAAATCCCGATGCCTTCTATCATACTGAAGCTGAAAGAAC
CACACACGATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGACATTTTATTAATGA
GGAAAGCTTTGTTTGACCATCTCACTGCCCGAGGCATTCAGGTGTATATTTGGGTATTAA
ATGAAGAGCAGGAATACAAAAGAGCTTTTGATTTGGGAGCAACCGGGGTGATGACAGACT
ATCCAACAAAGCTTAAGGATTTTTTACATAATGTTTCAGAATAGAAAAGAAGCTACTCAG
AAGCATTTCAAGAAAATATGAAAAGACTAAGAAAAAAAAAATTTCACTCTTTCCCTAAGC
CATTTCCAGAATGGTAAAAGGTTTAATCAGTTAAGTTTTTATTACCTCATTTTTAAGCCT
GTCTGAGAATGTAGAAACTATATATTGTATATTTATTTTAAATAATATTGCATATTTTAC
ATTTGTAAATTGTTTAGAAAGATAACTGGCTATGAGATGTGCGTAGACTATTGATCAAGA
TTTCTGTATGTGATGCTATATTCTACTATTATAAGTAATTCTGAAATCAAAGACTATTGG
ATAAACTTGACACTAGCCTTCACTGGAATAAGTCAACTAAGTAGTAAGACAGAATTACTG
AAGGCCATTACAGCTATCTGAGTTGTCTTGGTATCTCTAGGTACATCTTAGTTAAAGGGG
AAATTTCATACAATGGAAGGAGAGCTTGGAAATCAGTGATGTAACATCTGACAAGATGTA
TGTTGTTAACAGAAAGCAGACTCAAAGAAATAAGTGAAAGTTTATTACATGATCAGAAAT
AAAATCTGTAGATTGAATTAGGACTTCTTGGTTTCTGCTGTGAATAAGGACATTCCATCT
GGAATCTTTTTCAGGTGTATAACAATGCTACCGTGTCTTTTTTGTTGTTATGAACATTAA
AATTGGACTTAATAATTGTAAATTAAGACAAGATGCAAATGGTCACATTTTTGTTTCCTC
TAAAGAAATGTACATTTTCCATTTTTTTTTGGCAATGACTAACTGTTTGGGCCTACATCT
TAAATAACATCTTGAATTCTAATAATCATATGAAACTGATAAAAGTGCATATCATGGTTT
CTAACACTGAGAGTATAAACCACCTGCTCCTGACCTTTGAGAATTTGTTCTTCTGAGTAT
TAGGTGGAAGCAGAATTTCCCAAAGCATTAGACATCACTTTCTCAGCCTTTCTGATGGGA
CTTCATGTAAATCTGTTTCTCATCTTTTTGACTTATTTTCATTATCTCTTTGGGAGTAAA
TATAAGCTGGACTAATAAGCATCTTAAACCTCGATCTCTCATTTGGAGTTTGCCAGCTAA
CAGCTAGAAAGGATGTTCATACTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               157-1403, gnl|bosTau2|chr19 (4572329-4573580)
               

               
               157-1403, gnl|Hg17|chr17 (54705789-54708037)
               

               
               157-1403, gnl|Mm7|chr11 (87105208-87103850)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-1403, gnl|bosTau2|chr19 (4572329-4573580)
               

               
               157-1403, gnl|Hg17|chr17 (54705789-54708037)
               

               
               157-1403, gnl|Mm7|chr11 (87105208-87103850)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               rec (0.519211)
               

               
               lin (0.436808)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               lin (0.436808)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)

	157-1403, gnl\|bosTau2\|chr19 (4572329-4573580)
	157-1403, gnl\|Hg17\|chr17 (54705789-54708037)
	157-1403, gnl\|Mm7\|chr11 (87105208-87103850)

	rec (0.519211)
	lin (0.436808)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	mga (0.160205)
	fco (0.157208)