Non-Coding RNA Search

Ss1.1-Emb1-C0005191_N11.5

Sequence:


               
               GAGATGACGAGATTGCTGTCGGATAAGAAGCAACAATATCAAACTTCCTGTGTTGCTCTT
AAAAAGGGATCCTCCACCTTCCCGGACCACAGGGTCAAGGTAACCCCGCTAGGTAACCCC
GATAGGCCCGCTGCGGGGCAGACGGACAGAGAGAGAGAGAGTGAGGGCGAGGGTGAGGGC
CCTCTGCTCCGGTGGCTCAAGGTGAATTTCAGCGAAGCCTTTATCGCCTGGATCCACATC
AAGGGCCTGAGAGTGTTTGTGGAGTCTGTGCTCAGGTATGGACTGCCGGTGAACTTCCAG
GCAGTTCTCCTGCAGCCTCATAAGAAGTCATCCACCAAACGTCTAAGAGAGGTTCTGAAC
TCCGTCTTCAGACACCTGGATCAGGTCGCAGCTGCGAGTATACTGGATGCGTCCGTGGAG
ATCCCTGGCTTGCAGCTCAGCAACCAAGACTACTTTCCTTACGTCTATTTCCACATCGAC
CTGAGCCTCTTCGACTAGGACGGCGACGAGCTGGCACCGCTACCCCCGCACCTTCCCGCG
GTCCCCGGGCGCCTCCTTCCTTCTGCCAGAGAACAGTCTAAGCAGCCTACAGAACTGAGA
TGTCGAGAGAAACTGCTCACGAAAATCAGTTACAGTCGTATTTATTTTTTTTAAGTTAAC
AATAAAGAGGTGTTCTCAGTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGACGAGATTGCTGTCGGATAAGAAGCAACAATATCAAACTTCCTGTGTTGCTCTT
AAAAAGGGATCCTCCACCTTCCCGGACCACAGGGTCAAGGTAACCCCGCTAGGTAACCCC
GATAGGCCCGCTGCGGGGCAGACGGACAGAGAGAGAGAGAGTGAGGGCGAGGGTGAGGGC
CCTCTGCTCCGGTGGCTCAAGGTGAATTTCAGCGAAGCCTTTATCGCCTGGATCCACATC
AAGGGCCTGAGAGTGTTTGTGGAGTCTGTGCTCAGGTATGGACTGCCGGTGAACTTCCAG
GCAGTTCTCCTGCAGCCTCATAAGAAGTCATCCACCAAACGTCTAAGAGAGGTTCTGAAC
TCCGTCTTCAGACACCTGGATCAGGTCGCAGCTGCGAGTATACTGGATGCGTCCGTGGAG
ATCCCTGGCTTGCAGCTCAGCAACCAAGACTACTTTCCTTACGTCTATTTCCACATCGAC
CTGAGCCTCTTCGACTAGGACGGCGACGAGCTGGCACCGCTACCCCCGCACCTTCCCGCG
GTCCCCGGGCGCCTCCTTCCTTCTGCCAGAGAACAGTCTAAGCAGCCTACAGAACTGAGA
TGTCGAGAGAAACTGCTCACGAAAATCAGTTACAGTCGTATTTATTTTTTTTAAGTTAAC
AATAAAGAGGTGTTCTCAGTCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868594|ref|XP_585089.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868594|ref|XP_585089.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-178, + strand, RNAz p=0.518183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-178, + strand, RNAz p=0.518183

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127836, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127836, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               37-178, gnl|bosTau2|chr11 (64666554-64666695)
               

               
               37-178, gnl|canFam2|chr17 (10620540-10621045)
               

               
               37-178, gnl|dasNov1|scaffold_2958 (86771-87297)
               

               
               37-178, gnl|echTel1|scaffold_274605 (21971-21475)
               

               
               37-178, gnl|hg17|chr2 (10868207-10868724)
               

               
               37-178, gnl|Hg17|chr2 (10868306-10868447)
               

               
               37-178, gnl|mm7|chr12 (17338268-17337758)
               

               
               37-178, gnl|Mm7|chr12 (17338168-17338027)
               

               
               37-178, gnl|monDom2|scaffold_1 (129682966-129683506)
               

               
               37-178, gnl|oryCun1|scaffold_197215 (420-894)
               

               
               37-178, gnl|panTro1|chr12_random (5920917-5921434)
               

               
               37-178, gnl|rheMac2|chr13 (10869495-10870012)
               

               
               37-178, gnl|rn3|chr6_random (630950-630462)
               


               
               404-681, gnl|bosTau2|chr11 (64672716-64672992)
               

               
               404-681, gnl|Hg17|chr2 (10873893-10874166)
               

               
               404-681, gnl|Mm7|chr12 (17333981-17333754)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-178, gnl|bosTau2|chr11 (64666554-64666695)
               

               
               37-178, gnl|canFam2|chr17 (10620540-10621045)
               

               
               37-178, gnl|dasNov1|scaffold_2958 (86771-87297)
               

               
               37-178, gnl|echTel1|scaffold_274605 (21971-21475)
               

               
               37-178, gnl|hg17|chr2 (10868207-10868724)
               

               
               37-178, gnl|Hg17|chr2 (10868306-10868447)
               

               
               37-178, gnl|mm7|chr12 (17338268-17337758)
               

               
               37-178, gnl|Mm7|chr12 (17338168-17338027)
               

               
               37-178, gnl|monDom2|scaffold_1 (129682966-129683506)
               

               
               37-178, gnl|oryCun1|scaffold_197215 (420-894)
               

               
               37-178, gnl|panTro1|chr12_random (5920917-5921434)
               

               
               37-178, gnl|rheMac2|chr13 (10869495-10870012)
               

               
               37-178, gnl|rn3|chr6_random (630950-630462)
               


               
               404-681, gnl|bosTau2|chr11 (64672716-64672992)
               

               
               404-681, gnl|Hg17|chr2 (10873893-10874166)
               

               
               404-681, gnl|Mm7|chr12 (17333981-17333754)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	37-178, gnl\|bosTau2\|chr11 (64666554-64666695)
	37-178, gnl\|canFam2\|chr17 (10620540-10621045)
	37-178, gnl\|dasNov1\|scaffold_2958 (86771-87297)
	37-178, gnl\|echTel1\|scaffold_274605 (21971-21475)
	37-178, gnl\|hg17\|chr2 (10868207-10868724)
	37-178, gnl\|Hg17\|chr2 (10868306-10868447)
	37-178, gnl\|mm7\|chr12 (17338268-17337758)
	37-178, gnl\|Mm7\|chr12 (17338168-17338027)
	37-178, gnl\|monDom2\|scaffold_1 (129682966-129683506)
	37-178, gnl\|oryCun1\|scaffold_197215 (420-894)
	37-178, gnl\|panTro1\|chr12_random (5920917-5921434)
	37-178, gnl\|rheMac2\|chr13 (10869495-10870012)
	37-178, gnl\|rn3\|chr6_random (630950-630462)

	404-681, gnl\|bosTau2\|chr11 (64672716-64672992)
	404-681, gnl\|Hg17\|chr2 (10873893-10874166)
	404-681, gnl\|Mm7\|chr12 (17333981-17333754)