Non-Coding RNA Search

Ss1.1-Emb1-C0005192_B18.5

Sequence:


               
               TCTTCAGGCATAAAGAACAAAAGGAAAACATGGGAGAAGAGATCAACCTGGGGAAGTTCA
TCCCAAAACCTTCAGAAGGAACAACTCTCAGGGTAGAAGACCTTGTCAAGCAATATTTTC
AAACTGCAGAGAAGAATGTGCAGCTCTCGCTTCTAACAGAAAGGGGAATGGGTAAAGCAG
TACAAGAATTTGTAGACAAGGAAGAAAAAGATGCCATACAGGAATTAGTGAAATATCAGT
TGGAAAAAACACAGCGATTTCTTAAGGAACGTCATATTGATGCCCTGGAAGATAAAATCG
ATGAAGAGGTACGTCGTTTCAGAGAAAGCAGGCAGAAGAATACTAACGAGGAAGATGATG
AAGTTCAAGAGGCCATGAACAGAGCCAGAGCCCTCAGGTCCCAGGAAGAGGACGCCGCTT
CTGCCTTTAGCGCTGAAGACCTCATGAGCATCGATATGGCAGAACAGACGGCCAATGACT
CTGATGACAGCATCACAGCAGCGGCCAGCAGAGGAAGAGGCCGAGGAAGAGGCCGGAGAG
GAGGAAGAGGGCAGAGCTTGGTGTCGAGAGGAGCGTCTCAGAGAGGAAGAGGCACTGGTC
TGGAGACTTCTACTCCAAGCAGAAGTTCAAAAGCCACTATGTCAACATCTAGAAATATGA
CTATTATTGATGCCTTTAAATCTGCAAGAAAGCAGCCGTCTCAAAATGCTGCTCCTAAGA
ATTATTCGGAGGTGATTGAGGTGGATGAGTCAGATACGGAAGAAGACATTTTTCCTACCA
CTTCAAAAACAGATCAAAGGTGGTTGAGCACGTCGTCATCAAGCAAACGCGCGTCCCAGA
GCCAGGTGGCTAGAGGGGTCGATTTTGAATCAGATGAGGATGACGATGATGATCCTTTTA
TGAACCTTAGTTCTTTAAGAAGAAACAGAAGATAATATATTTAATGGCAGTTTGAAGTTT
TCAAGAGTCGGGAAAGATCAAAACATTGCATTAAAAGTTTACCAGCTGAAGGTTTCTTGA
GTAGTCCTGTTCACTGAAGAATTCAAATGATTCTTAACAAAGACACTAATGTGTAAAGAT
TTTTGCTTTTTAATATTTCCTGAACATGACTCCATAAGGAAACTTCCCAGCTTCAGGGCA
TATAGAATAGCATTGATTCTCCTTATGTGTCAATGTGTTACCTGTTCTCTAAATGCTCTG
TGAAACTTGGAATGGTATTTTCCTGACATACATTCGTATACGCCTTACTGAGTGAGAACT
TTGCTTAAATATCATTCTTAAGGACTAAAATAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCAGGCATAAAGAACAAAAGGAAAACATGGGAGAAGAGATCAACCTGGGGAAGTTCA
TCCCAAAACCTTCAGAAGGAACAACTCTCAGGGTAGAAGACCTTGTCAAGCAATATTTTC
AAACTGCAGAGAAGAATGTGCAGCTCTCGCTTCTAACAGAAAGGGGAATGGGTAAAGCAG
TACAAGAATTTGTAGACAAGGAAGAAAAAGATGCCATACAGGAATTAGTGAAATATCAGT
TGGAAAAAACACAGCGATTTCTTAAGGAACGTCATATTGATGCCCTGGAAGATAAAATCG
ATGAAGAGGTACGTCGTTTCAGAGAAAGCAGGCAGAAGAATACTAACGAGGAAGATGATG
AAGTTCAAGAGGCCATGAACAGAGCCAGAGCCCTCAGGTCCCAGGAAGAGGACGCCGCTT
CTGCCTTTAGCGCTGAAGACCTCATGAGCATCGATATGGCAGAACAGACGGCCAATGACT
CTGATGACAGCATCACAGCAGCGGCCAGCAGAGGAAGAGGCCGAGGAAGAGGCCGGAGAG
GAGGAAGAGGGCAGAGCTTGGTGTCGAGAGGAGCGTCTCAGAGAGGAAGAGGCACTGGTC
TGGAGACTTCTACTCCAAGCAGAAGTTCAAAAGCCACTATGTCAACATCTAGAAATATGA
CTATTATTGATGCCTTTAAATCTGCAAGAAAGCAGCCGTCTCAAAATGCTGCTCCTAAGA
ATTATTCGGAGGTGATTGAGGTGGATGAGTCAGATACGGAAGAAGACATTTTTCCTACCA
CTTCAAAAACAGATCAAAGGTGGTTGAGCACGTCGTCATCAAGCAAACGCGCGTCCCAGA
GCCAGGTGGCTAGAGGGGTCGATTTTGAATCAGATGAGGATGACGATGATGATCCTTTTA
TGAACCTTAGTTCTTTAAGAAGAAACAGAAGATAATATATTTAATGGCAGTTTGAAGTTT
TCAAGAGTCGGGAAAGATCAAAACATTGCATTAAAAGTTTACCAGCTGAAGGTTTCTTGA
GTAGTCCTGTTCACTGAAGAATTCAAATGATTCTTAACAAAGACACTAATGTGTAAAGAT
TTTTGCTTTTTAATATTTCCTGAACATGACTCCATAAGGAAACTTCCCAGCTTCAGGGCA
TATAGAATAGCATTGATTCTCCTTATGTGTCAATGTGTTACCTGTTCTCTAAATGCTCTG
TGAAACTTGGAATGGTATTTTCCTGACATACATTCGTATACGCCTTACTGAGTGAGAACT
TTGCTTAAATATCATTCTTAAGGACTAAAATAAACA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               816-1282, gnl|bosTau2|chr29 (28622805-28623256)
               

               
               816-1282, gnl|Mm7|chr9 (14668366-14669660)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               816-1282, gnl|bosTau2|chr29 (28622805-28623256)
               

               
               816-1282, gnl|Mm7|chr9 (14668366-14669660)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	816-1282, gnl\|bosTau2\|chr29 (28622805-28623256)
	816-1282, gnl\|Mm7\|chr9 (14668366-14669660)

	med (0.232504)
	aor (0.195274)
	lin (0.145603)
	nmm (0.132802)
	kid (0.129735)
	tra (0.123092)