Non-Coding RNA Search

Ss1.1-Emb1-C0005192_C04.5

Sequence:


               
               GCCCGCGGAGCCGAGCGCAGCGAGAGAGCGAGCGCGCGAGCGGGCGAGCGCCTGGGCGGC
TGCGGCGGCTCCTCGCGCGATGGCTCCGGCCGCGGACCGCCAGGGCTACTGGGGCCCCCC
GACCTCCACGCTGGACTGGTGCGAGGAGAACTACGCGGTGACCTGGTACATCGCCGAGTT
CTGGAATACAGTGAGTAATCTGATTATGATTATACCTCCGGTTTTTGGTGCAATTCAGAG
TGTTAGAGATGGACTGGAAAAGCGGTACATTGCTTCCTATTTAGCACTCACAGTGGTAGG
AATGGGATCCTGGTGCTTCCACATGACTCTGAAATACGAAATGCAGCTCTTGGATGAACT
CCCAATGATTTACAGCTGTTGTATATTCGTGTACTGCATGTTTGAATGTTTCAAGACGAA
GAGCTCTGTAAACTACCATCTGCTTTTTACCTTAGTCCTATTCAGTTTAATAGTAACTAC
AGTTTACCTTAAGGTAAAGGAGCCTATATTCCATCAGGTCATGTATGGAATGTTGGTCTT
CACATTAGTAGTTCGGTCTATTTATATCGTTACATGGGTTTATCCATGGCTTAGAGGACT
GGGTTATACATCCTTGGGTATATTTTTAATGGGATTTTTATTATGGAACATAGATAACAT
CTTTTGTGACTCACTGAGGAACTTTCGAAAGAAGGTGCCACCTATCATAGGTGTTACCAC
TCAGTTTCATGCATGGTGGCATATTTTAACTGGCCTTGGTTCTTATCTTCACATCCTTTT
CAGTTTATATACAAGAACACTTTACCTGAGATACAGGCCAAAAGTGAAGTTTCTCTTCGG
AATCTGGCCAGTGATCTTGTTTGAGCCTCTCAGGAAGCACTGATGAATTATTTCACCAAG
AAAACAAACAAAAAAAGCGCATACCATAGACCTGGCCAAATGAATAAGGAAATCCTTAAA
GATCTACATGTTCAAATATATCTGACCATCGTAGCTTTGGAGTGACTTTCTGATTAATGC
TGCCAGCCACACAAAGAATGAGGAATGGGGTTTTTGGGTGTTTAACTTGTATCTTTATCT
CATTTGTCTTCCTCCTCCTCACCCTCACCCTAATGTGTTTAAAAAGAAATAAGACATGAT
GTGTATGTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCGGAGCCGAGCGCAGCGAGAGAGCGAGCGCGCGAGCGGGCGAGCGCCTGGGCGGC
TGCGGCGGCTCCTCGCGCGATGGCTCCGGCCGCGGACCGCCAGGGCTACTGGGGCCCCCC
GACCTCCACGCTGGACTGGTGCGAGGAGAACTACGCGGTGACCTGGTACATCGCCGAGTT
CTGGAATACAGTGAGTAATCTGATTATGATTATACCTCCGGTTTTTGGTGCAATTCAGAG
TGTTAGAGATGGACTGGAAAAGCGGTACATTGCTTCCTATTTAGCACTCACAGTGGTAGG
AATGGGATCCTGGTGCTTCCACATGACTCTGAAATACGAAATGCAGCTCTTGGATGAACT
CCCAATGATTTACAGCTGTTGTATATTCGTGTACTGCATGTTTGAATGTTTCAAGACGAA
GAGCTCTGTAAACTACCATCTGCTTTTTACCTTAGTCCTATTCAGTTTAATAGTAACTAC
AGTTTACCTTAAGGTAAAGGAGCCTATATTCCATCAGGTCATGTATGGAATGTTGGTCTT
CACATTAGTAGTTCGGTCTATTTATATCGTTACATGGGTTTATCCATGGCTTAGAGGACT
GGGTTATACATCCTTGGGTATATTTTTAATGGGATTTTTATTATGGAACATAGATAACAT
CTTTTGTGACTCACTGAGGAACTTTCGAAAGAAGGTGCCACCTATCATAGGTGTTACCAC
TCAGTTTCATGCATGGTGGCATATTTTAACTGGCCTTGGTTCTTATCTTCACATCCTTTT
CAGTTTATATACAAGAACACTTTACCTGAGATACAGGCCAAAAGTGAAGTTTCTCTTCGG
AATCTGGCCAGTGATCTTGTTTGAGCCTCTCAGGAAGCACTGATGAATTATTTCACCAAG
AAAACAAACAAAAAAAGCGCATACCATAGACCTGGCCAAATGAATAAGGAAATCCTTAAA
GATCTACATGTTCAAATATATCTGACCATCGTAGCTTTGGAGTGACTTTCTGATTAATGC
TGCCAGCCACACAAAGAATGAGGAATGGGGTTTTTGGGTGTTTAACTTGTATCTTTATCT
CATTTGTCTTCCTCCTCCTCACCCTCACCCTAATGTGTTTAAAAAGAAATAAGACATGAT
GTGTATGTATAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49522549|gb|AAH73853.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49522549|gb|AAH73853.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               62-183, gnl|bosTau2|chr13 (22355503-22355382)
               

               
               62-183, gnl|Hg17|chr11 (76249649-76249772)
               

               
               62-183, gnl|Mm7|chr7 (94341363-94341249)
               


               
               552-679, gnl|bosTau2|chr15 (35427127-35427255)
               

               
               552-679, gnl|Hg17|chr11 (76403681-76403810)
               

               
               552-679, gnl|Mm7|chr7 (94258424-94258300)
               


               
               722-1152, gnl|bosTau2|chr11 (29783634-29784054)
               

               
               722-1152, gnl|Hg17|chr11 (76405410-76409278)
               

               
               722-1152, gnl|Mm7|chr7 (94250017-94248494)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-183, gnl|bosTau2|chr13 (22355503-22355382)
               

               
               62-183, gnl|Hg17|chr11 (76249649-76249772)
               

               
               62-183, gnl|Mm7|chr7 (94341363-94341249)
               


               
               552-679, gnl|bosTau2|chr15 (35427127-35427255)
               

               
               552-679, gnl|Hg17|chr11 (76403681-76403810)
               

               
               552-679, gnl|Mm7|chr7 (94258424-94258300)
               


               
               722-1152, gnl|bosTau2|chr11 (29783634-29784054)
               

               
               722-1152, gnl|Hg17|chr11 (76405410-76409278)
               

               
               722-1152, gnl|Mm7|chr7 (94250017-94248494)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.415628)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

	62-183, gnl\|bosTau2\|chr13 (22355503-22355382)
	62-183, gnl\|Hg17\|chr11 (76249649-76249772)
	62-183, gnl\|Mm7\|chr7 (94341363-94341249)

	552-679, gnl\|bosTau2\|chr15 (35427127-35427255)
	552-679, gnl\|Hg17\|chr11 (76403681-76403810)
	552-679, gnl\|Mm7\|chr7 (94258424-94258300)

	722-1152, gnl\|bosTau2\|chr11 (29783634-29784054)
	722-1152, gnl\|Hg17\|chr11 (76405410-76409278)
	722-1152, gnl\|Mm7\|chr7 (94250017-94248494)

	tes (0.415628)
	rec (0.17307)
	mga (0.160205)
	fat (0.147427)
	nca (0.136874)
	thg (0.126791)
	jca (0.11396)