Non-Coding RNA Search

Ss1.1-Emb1-C0005192_D23.5

Sequence:


               
               AGACTGCATCCTGAATTGGGAAATACGAAAAGGTCAGAAAAAACAGGGAGTTCAAAGTGT
GGCCCTGACGCTAGTCCCAAATCTGACTCAGATTTGGGATCTGCAACCGAATCGGATGCT
GACTGTCCTGGTGATACAAAAACCAAAAAGAGGAAGACGAAAGGAAAAGCAAAAGTAGTT
AGAAAAGGTAAAACTTTTATAGCTAACGTATCTAAAACTGTGAGACCACAGAGACAAAGC
AAACGTCCTAGGTTAAATGTGGATGATAATGACTGGGAGGATTTGGACTATGCAAAATCT
AAACGAGTTCTTCGACCTTCCGATATAAAGACGAGAAATCAGGGTAGAAGGACCGTGAGA
TACCATGATGGGGATGATGAGAGAAGCTTAGAAAATGTGTTAGATTTTGAGGATTGCACC
TTATGACCTTGAGGGAAAACCAGTTCATTTAAAGAGGGAATGGACTGGAATTTGTAGTGA
AAGTTGGCTGTTGAAATTATTTTTTGTCCTACAATTCAGGGAATATATTTATATTTTTCT
ATGAAAAGTTATGAATGTGACTAAATCATGACTGTTATTTTTATTTGCACTTGCCTGCCT
TTGTAGCAGCATTCAGCACAGGTGCCAAAATATGCTTCATTTTGGGGGCAGACCTACTTT
GACAGTATTTAACTACAAATAGCAAGAGTCTGAAATATGTTAAACACTAGACATCCTGGT
TATCAAAACCAATGAGCATTACTTTCACGGTAGCAAGTGTCGCACAGCTGTTTTCTGAAT
TCGTCAAGAGGTGGTAGTCTCTAATCCCAGTCCTATTGTACTATAAATTTCATGTGACCT
ATGTTTACAGATTCTTCATAAACATTATGTGCATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTGCATCCTGAATTGGGAAATACGAAAAGGTCAGAAAAAACAGGGAGTTCAAAGTGT
GGCCCTGACGCTAGTCCCAAATCTGACTCAGATTTGGGATCTGCAACCGAATCGGATGCT
GACTGTCCTGGTGATACAAAAACCAAAAAGAGGAAGACGAAAGGAAAAGCAAAAGTAGTT
AGAAAAGGTAAAACTTTTATAGCTAACGTATCTAAAACTGTGAGACCACAGAGACAAAGC
AAACGTCCTAGGTTAAATGTGGATGATAATGACTGGGAGGATTTGGACTATGCAAAATCT
AAACGAGTTCTTCGACCTTCCGATATAAAGACGAGAAATCAGGGTAGAAGGACCGTGAGA
TACCATGATGGGGATGATGAGAGAAGCTTAGAAAATGTGTTAGATTTTGAGGATTGCACC
TTATGACCTTGAGGGAAAACCAGTTCATTTAAAGAGGGAATGGACTGGAATTTGTAGTGA
AAGTTGGCTGTTGAAATTATTTTTTGTCCTACAATTCAGGGAATATATTTATATTTTTCT
ATGAAAAGTTATGAATGTGACTAAATCATGACTGTTATTTTTATTTGCACTTGCCTGCCT
TTGTAGCAGCATTCAGCACAGGTGCCAAAATATGCTTCATTTTGGGGGCAGACCTACTTT
GACAGTATTTAACTACAAATAGCAAGAGTCTGAAATATGTTAAACACTAGACATCCTGGT
TATCAAAACCAATGAGCATTACTTTCACGGTAGCAAGTGTCGCACAGCTGTTTTCTGAAT
TCGTCAAGAGGTGGTAGTCTCTAATCCCAGTCCTATTGTACTATAAATTTCATGTGACCT
ATGTTTACAGATTCTTCATAAACATTATGTGCATAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-156, - strand, RNAz p=0.995713
               

               
               555-668, + strand, RNAz p=0.55385

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.995713
               

               
               555-668, + strand, RNAz p=0.55385

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr1 (89266336-89267218)
               

               
               1-876, gnl|Hg17|chr21 (39490477-39489606)
               

               
               1-876, gnl|Mm7|chr16 (96339113-96338268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr1 (89266336-89267218)
               

               
               1-876, gnl|Hg17|chr21 (39490477-39489606)
               

               
               1-876, gnl|Mm7|chr16 (96339113-96338268)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tra (0.246184)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               nco (0.161734)

	1-156, - strand, RNAz p=0.995713
	555-668, + strand, RNAz p=0.55385

	1-876, gnl\|bosTau2\|chr1 (89266336-89267218)
	1-876, gnl\|Hg17\|chr21 (39490477-39489606)
	1-876, gnl\|Mm7\|chr16 (96339113-96338268)