Non-Coding RNA Search

Ss1.1-Emb1-C0005192_F10.5

Sequence:


               
               CAACTTAACATCTGCATTTACTTAAAATTTTTAAATGAGGACTTATGATCAGCCTGAACC
GAGGTACTGTTACCTCTGCGCATTCCCAAAGTCTAGATACTCAGTATGTCACACCTCTTC
TTCCAAAAGCGGTGAACTGGTTACTACTTTTTTGATACTCATTGTGCGTTTATCCGCCTA
GTTCACCTTGTTCTCGTGTCTGCTGTAGAAGGGAAGCGTGTCGCTGTTGCAGCAGCGGGG
TCGTCACTGTGTACATGCTGTGAACATGCGTATGTGCGAGTTGTCATGGAGTCCCGTCGG
AGGTTTACCGTTGAAGCCCACCTCTTCATCCCTTTCGTGCAGTGGCCAGGCAGGCACCTC
CGACTCCAGCGTGTACGTTTAGTGCATGTGTACATTGGAGGCCACTGGATCCAGAGGTTC
ATATTGGCAGTTACTGAGGGCAAAAGCAATATATTATAACAGAATGTATAAATATTTTTG
ATAAAACAGTCTATATTTTATAAAATTATTATAACACTAAAGCTGTACCTCAAAAGTCAA
AAATAATTTGATCAAATACCTTTTGCAACACTTCGGAGGATCCACTTGTGGCTTTTTTTA
ATGCTCTTATAGGAAAGTGTTTTTGCAAGCCATGACTTTTCTACTTACCTGGAGTTTTTT
TTGGGTTTTTTGTTTTAATTATTTTCCCTCCTCCTCTTACGACTTTATTGGTTTTCGTTA
GCTCCGCAATAGCTAATCTTTGATTCTGTGCTTCATGTGGTAGAGTCGTCATACCTCAGG
AAGAGCACGTGTTGACTGACCGAGTACTGAGTTAAGCGTTTCGTCACGGTGAGCTCTTGT
CGTGAGGGCTGTTCAAGATTAAATCCCGTGAGAAAAATGAAAGCGCATGGATTTATAGAG
AGTTGAGCTGAAAACATTTATGAATATTTCAGCCATGCCAGAGTGTGTCGGCATGTTTCT
CTTGTCCTCTGAGAACAATTAAGATTGTTCAGAGATAATTCCTATTTCTTTATGAATTGA
TTATTGCCCATGATCCTTTGGGTGGAAATCTTATAGGAGGGAGCAATATGTTATTTAAAA
TTATTTTAAAATGCCATTGAACTTCCTTGGCAAAGGACAGTAGAGGATCTTAGTTTAATT
GTCTGGTTTTAATTTAAACAGTGTTAATACAATTAAAAAAAAAAACAACACTAAATGCTT
TTGAGGTACAGTCTGCTCACCTTTTCTGGTTCTCAAATGTGCAGAGAAAGCAAAGGCCTC
AAACCGGCTTTTAGCTTTAAAACCCGACCTAACGCTTTGTAACCACACAGTGTACAGATT
ATTTTTAATTGAAGTCAATCACTAAAAAAAATTAGAGGGCAGGGTATATTCACACAATTA
AGCTGAAGAAAGCACTAATTTTTTCTGTAGTCTTAAATATATATATTTTAGATTTTAAAT
TTTTAAACTCTATGGAGTGTAAATATATTTTGTTATTACTGTATGTGTAAGTGACTGCTC
AAGCACTTTGCAAGGAAATCAGGATATTTTAGAATGGTACACTATGCATTCAGAAGAAAT
GTGCCTTCATGTCATTTTAAGAAAAAGTGTTTTGCAGTCGTAAGTCACCACAAATGCACA
AATTAAAGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTTAACATCTGCATTTACTTAAAATTTTTAAATGAGGACTTATGATCAGCCTGAACC
GAGGTACTGTTACCTCTGCGCATTCCCAAAGTCTAGATACTCAGTATGTCACACCTCTTC
TTCCAAAAGCGGTGAACTGGTTACTACTTTTTTGATACTCATTGTGCGTTTATCCGCCTA
GTTCACCTTGTTCTCGTGTCTGCTGTAGAAGGGAAGCGTGTCGCTGTTGCAGCAGCGGGG
TCGTCACTGTGTACATGCTGTGAACATGCGTATGTGCGAGTTGTCATGGAGTCCCGTCGG
AGGTTTACCGTTGAAGCCCACCTCTTCATCCCTTTCGTGCAGTGGCCAGGCAGGCACCTC
CGACTCCAGCGTGTACGTTTAGTGCATGTGTACATTGGAGGCCACTGGATCCAGAGGTTC
ATATTGGCAGTTACTGAGGGCAAAAGCAATATATTATAACAGAATGTATAAATATTTTTG
ATAAAACAGTCTATATTTTATAAAATTATTATAACACTAAAGCTGTACCTCAAAAGTCAA
AAATAATTTGATCAAATACCTTTTGCAACACTTCGGAGGATCCACTTGTGGCTTTTTTTA
ATGCTCTTATAGGAAAGTGTTTTTGCAAGCCATGACTTTTCTACTTACCTGGAGTTTTTT
TTGGGTTTTTTGTTTTAATTATTTTCCCTCCTCCTCTTACGACTTTATTGGTTTTCGTTA
GCTCCGCAATAGCTAATCTTTGATTCTGTGCTTCATGTGGTAGAGTCGTCATACCTCAGG
AAGAGCACGTGTTGACTGACCGAGTACTGAGTTAAGCGTTTCGTCACGGTGAGCTCTTGT
CGTGAGGGCTGTTCAAGATTAAATCCCGTGAGAAAAATGAAAGCGCATGGATTTATAGAG
AGTTGAGCTGAAAACATTTATGAATATTTCAGCCATGCCAGAGTGTGTCGGCATGTTTCT
CTTGTCCTCTGAGAACAATTAAGATTGTTCAGAGATAATTCCTATTTCTTTATGAATTGA
TTATTGCCCATGATCCTTTGGGTGGAAATCTTATAGGAGGGAGCAATATGTTATTTAAAA
TTATTTTAAAATGCCATTGAACTTCCTTGGCAAAGGACAGTAGAGGATCTTAGTTTAATT
GTCTGGTTTTAATTTAAACAGTGTTAATACAATTAAAAAAAAAAACAACACTAAATGCTT
TTGAGGTACAGTCTGCTCACCTTTTCTGGTTCTCAAATGTGCAGAGAAAGCAAAGGCCTC
AAACCGGCTTTTAGCTTTAAAACCCGACCTAACGCTTTGTAACCACACAGTGTACAGATT
ATTTTTAATTGAAGTCAATCACTAAAAAAAATTAGAGGGCAGGGTATATTCACACAATTA
AGCTGAAGAAAGCACTAATTTTTTCTGTAGTCTTAAATATATATATTTTAGATTTTAAAT
TTTTAAACTCTATGGAGTGTAAATATATTTTGTTATTACTGTATGTGTAAGTGACTGCTC
AAGCACTTTGCAAGGAAATCAGGATATTTTAGAATGGTACACTATGCATTCAGAAGAAAT
GTGCCTTCATGTCATTTTAAGAAAAAGTGTTTTGCAGTCGTAAGTCACCACAAATGCACA
AATTAAAGTTGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               306-425, + strand, RNAz p=0.779059
               

               
               889-1004, - strand, RNAz p=0.725265
               

               
               1493-1604, - strand, RNAz p=0.972358

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-425, + strand, RNAz p=0.779059
               

               
               889-1004, - strand, RNAz p=0.725265
               

               
               1493-1604, - strand, RNAz p=0.972358

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC062620, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC062620, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1630, gnl|bosTau2|chr3 (45624170-45622533)
               

               
               1-1630, gnl|Hg17|chr1 (89011862-89013488)
               

               
               1-1630, gnl|Mm7|chr3 (142686083-142684477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1630, gnl|bosTau2|chr3 (45624170-45622533)
               

               
               1-1630, gnl|Hg17|chr1 (89011862-89013488)
               

               
               1-1630, gnl|Mm7|chr3 (142686083-142684477)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pla (0.267344)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	306-425, + strand, RNAz p=0.779059
	889-1004, - strand, RNAz p=0.725265
	1493-1604, - strand, RNAz p=0.972358

	1-1630, gnl\|bosTau2\|chr3 (45624170-45622533)
	1-1630, gnl\|Hg17\|chr1 (89011862-89013488)
	1-1630, gnl\|Mm7\|chr3 (142686083-142684477)

	pla (0.267344)
	sug (0.254582)
	nms (0.213858)
	mgm (0.180343)
	ton (0.1755)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	tbr (0.154178)
	fat (0.147427)
	csk (0.140746)
	tra (0.123092)
	cty (0.10408)
	eje (0.0988338)