Ss1.1-Emb1-C0005192_F23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCTTCAGTCCAGTCGCCTTCTCCCTGGGGCTGCTTCTGGTGATGGCTACTGCCTTCC CTACCCCGGGACGCCTGGAAGAAGATGCCAAAGGTGATGCCACCTCAGACAAAATGCTCT TCACCTCTCCGGACAAAACTGAAGAACTCATTAAGTACATCCTCGGCAAAATCTCTGCAA TGAGAAAGGAGATGTGTGAGAAGTATGAGAAGTGTGAAAACAGCAAGGAGGTACTGGCAG AAAACAACCTGAACCTTCCAAAAATGGCAGAAAAAGACGGATGCTTCCAATCTGGGTTCA ATCAGGAGACCTGCTTGATGAGAATCACCACCGGTCTTGTGGAGTTTCAGATATACCTGG ACTACCTCCAGAAAGAGTATGAGAGCAATAAGGGAAATGTCGAGGCTGTGCAGATTAGTA CCAAAGCACTGATCCAGACCCTGAGGCAAAAGGGAAAGAATCCAGACAAAGCCACCACCC CTAACCCCACCACAAATGCCGGCCTGCTGGATAAGCTGCAGTCACAGAACGAGTGGATGA AGAACACAAAGATCATTCTCATCCTGCGCAGCCTTGAGGATTTCCTGCAGTTCAGCCTGA GGGCCATTCGGATAATGTAGCTGGGGCACCTGAGATTGATGCCGTCCACGGGCATTCCCT CCTCTGGTCAGAAACCTGTCCACTGGGCACATAACTTATGTTGTTCTCTATGAAGAACTA AAAGTATGAGCGTTAGGACACTATTTTAATTATTTTAATTTATTGATATTTAAATATGTG ATGTCGAGTTAATTTATATAAGTGATAGATATTTATATTTTTATTAAGTGCCACTTGAAA TATTTTATGTATTTGTTTTGAAAAAGTAACGTAAAATGGCTACACGGCTTGAAGATCCTT GTTGTTTCAGAGCCAGGTTGTTTCTTGGAGTGTGTAGGCTTACCTCAAATAAATTGCTAA CTTATACGTATTTTTAAAAGAAATATTTATATTGTATTTATATAAAGTTTAAGTTGTTTT TATACCAATAAACACCTTTTTAAAAAAAAAAAAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCTTCAGTCCAGTCGCCTTCTCCCTGGGGCTGCTTCTGGTGATGGCTACTGCCTTCC CTACCCCGGGACGCCTGGAAGAAGATGCCAAAGGTGATGCCACCTCAGACAAAATGCTCT TCACCTCTCCGGACAAAACTGAAGAACTCATTAAGTACATCCTCGGCAAAATCTCTGCAA TGAGAAAGGAGATGTGTGAGAAGTATGAGAAGTGTGAAAACAGCAAGGAGGTACTGGCAG AAAACAACCTGAACCTTCCAAAAATGGCAGAAAAAGACGGATGCTTCCAATCTGGGTTCA ATCAGGAGACCTGCTTGATGAGAATCACCACCGGTCTTGTGGAGTTTCAGATATACCTGG ACTACCTCCAGAAAGAGTATGAGAGCAATAAGGGAAATGTCGAGGCTGTGCAGATTAGTA CCAAAGCACTGATCCAGACCCTGAGGCAAAAGGGAAAGAATCCAGACAAAGCCACCACCC CTAACCCCACCACAAATGCCGGCCTGCTGGATAAGCTGCAGTCACAGAACGAGTGGATGA AGAACACAAAGATCATTCTCATCCTGCGCAGCCTTGAGGATTTCCTGCAGTTCAGCCTGA GGGCCATTCGGATAATGTAGCTGGGGCACCTGAGATTGATGCCGTCCACGGGCATTCCCT CCTCTGGTCAGAAACCTGTCCACTGGGCACATAACTTATGTTGTTCTCTATGAAGAACTA AAAGTATGAGCGTTAGGACACTATTTTAATTATTTTAATTTATTGATATTTAAATATGTG ATGTCGAGTTAATTTATATAAGTGATAGATATTTATATTTTTATTAAGTGCCACTTGAAA TATTTTATGTATTTGTTTTGAAAAAGTAACGTAAAATGGCTACACGGCTTGAAGATCCTT GTTGTTTCAGAGCCAGGTTGTTTCTTGGAGTGTGTAGGCTTACCTCAAATAAATTGCTAA CTTATACGTATTTTTAAAAGAAATATTTATATTGTATTTATATAAAGTTTAAGTTGTTTT TATACCAATAAACACCTTTTTAAAAAAAAAAAAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 107-197, + strand, RNAz p=0.939409 | |
| 676-787, - strand, RNAz p=0.571562 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 107-197, + strand, RNAz p=0.939409 | |
| 676-787, - strand, RNAz p=0.571562 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-197, gnl|bosTau2|chr4 (11347532-11347728) | |
| 1-197, gnl|canFam2|chr14 (39433027-39433661) | |
| 1-197, gnl|dasNov1|scaffold_109313 (4204-4832) | |
| 1-197, gnl|echTel1|scaffold_232511 (3847-4450) | |
| 1-197, gnl|hg17|chr7 (22540228-22540841) | |
| 1-197, gnl|Hg17|chr7 (22540303-22540499) | |
| 1-197, gnl|loxAfr1|scaffold_10718 (67184-67801) | |
| 1-197, gnl|mm7|chr5 (29046211-29046834) | |
| 1-197, gnl|Mm7|chr5 (29046288-29046478) | |
| 1-197, gnl|monDom2|scaffold_57 (4461406-4460749) | |
| 1-197, gnl|oryCun1|scaffold_129838 (8586-9131) | |
| 1-197, gnl|panTro1|chr6 (23611979-23612592) | |
| 1-197, gnl|rheMac2|chr3 (103516978-103516364) | |
| 1-197, gnl|rn3|chr4 (461209-460583) | |
| 297-453, gnl|bosTau2|chr4 (11349659-11349815) | |
| 297-453, gnl|canFam2|chr14 (39435103-39435291) | |
| 297-453, gnl|echTel1|scaffold_232511 (6429-6619) | |
| 297-453, gnl|hg17|chr7 (22542290-22542480) | |
| 297-453, gnl|Hg17|chr7 (22542364-22542520) | |
| 297-453, gnl|loxAfr1|scaffold_10718 (69852-70042) | |
| 297-453, gnl|mm7|chr5 (29050837-29051027) | |
| 297-453, gnl|Mm7|chr5 (29050908-29051067) | |
| 297-453, gnl|monDom2|scaffold_57 (4458284-4458064) | |
| 297-453, gnl|oryCun1|scaffold_167814 (20784-20582) | |
| 297-453, gnl|panTro1|chr6 (23614041-23614231) | |
| 297-453, gnl|rheMac2|chr3 (103514919-103514729) | |
| 297-453, gnl|rn3|chr4 (458770-458579) | |
| 484-1053, gnl|bosTau2|chr4 (11351104-11351671) | |
| 484-1053, gnl|Hg17|chr7 (22544289-22544853) | |
| 484-1053, gnl|Mm7|chr5 (29052317-29052887) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-197, gnl|bosTau2|chr4 (11347532-11347728) | |
| 1-197, gnl|canFam2|chr14 (39433027-39433661) | |
| 1-197, gnl|dasNov1|scaffold_109313 (4204-4832) | |
| 1-197, gnl|echTel1|scaffold_232511 (3847-4450) | |
| 1-197, gnl|hg17|chr7 (22540228-22540841) | |
| 1-197, gnl|Hg17|chr7 (22540303-22540499) | |
| 1-197, gnl|loxAfr1|scaffold_10718 (67184-67801) | |
| 1-197, gnl|mm7|chr5 (29046211-29046834) | |
| 1-197, gnl|Mm7|chr5 (29046288-29046478) | |
| 1-197, gnl|monDom2|scaffold_57 (4461406-4460749) | |
| 1-197, gnl|oryCun1|scaffold_129838 (8586-9131) | |
| 1-197, gnl|panTro1|chr6 (23611979-23612592) | |
| 1-197, gnl|rheMac2|chr3 (103516978-103516364) | |
| 1-197, gnl|rn3|chr4 (461209-460583) | |
| 297-453, gnl|bosTau2|chr4 (11349659-11349815) | |
| 297-453, gnl|canFam2|chr14 (39435103-39435291) | |
| 297-453, gnl|echTel1|scaffold_232511 (6429-6619) | |
| 297-453, gnl|hg17|chr7 (22542290-22542480) | |
| 297-453, gnl|Hg17|chr7 (22542364-22542520) | |
| 297-453, gnl|loxAfr1|scaffold_10718 (69852-70042) | |
| 297-453, gnl|mm7|chr5 (29050837-29051027) | |
| 297-453, gnl|Mm7|chr5 (29050908-29051067) | |
| 297-453, gnl|monDom2|scaffold_57 (4458284-4458064) | |
| 297-453, gnl|oryCun1|scaffold_167814 (20784-20582) | |
| 297-453, gnl|panTro1|chr6 (23614041-23614231) | |
| 297-453, gnl|rheMac2|chr3 (103514919-103514729) | |
| 297-453, gnl|rn3|chr4 (458770-458579) | |
| 484-1053, gnl|bosTau2|chr4 (11351104-11351671) | |
| 484-1053, gnl|Hg17|chr7 (22544289-22544853) | |
| 484-1053, gnl|Mm7|chr5 (29052317-29052887) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| gul (0.177588) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| tra (0.123092) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| tra (0.123092) |