Non-Coding RNA Search

Ss1.1-Emb1-C0005192_J05.5

Sequence:


               
               ATGCTGATGGAGATAAATCATTGCCACAGACAGAAAGAATTTACTTTCAGGTCTTCTTAC
CTAAGGGGAGCAAAGAGAAAAGCAAACCAATGTTTTTTTGCCAACGATGGAGCATTGGAA
AGGTCATAGACTTTGCAGCTTCTTTAGCCAGTCTTAAGAATGACAACAACAAATTAACAG
CTAAGAAATTGAGGTTGTGTCACATTACCTCAGGAGAAGCCTTACCCTTGGATCATATTT
TGGAAACCTGGATTGCTAAGGAGGATTGTCCTTTATATAATGGTGGAAATGTTATCTTGG
AATATCTTAATGATGAAGAACAGTTTTTAAAAAATGTGGATTCTTACTTGGAATAGTCTT
TGAAGATTCAAACCAGGAATCACAAGGAAAATTCAATGTTAATTTCTTTTATTGCAAGTA
TTATAAATTTTTTTATTTTTGAATTTTTGGGGGGAGTTCTCTTATGGTGCAGTGGATTAA
GGATCTGGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGATGGAGATAAATCATTGCCACAGACAGAAAGAATTTACTTTCAGGTCTTCTTAC
CTAAGGGGAGCAAAGAGAAAAGCAAACCAATGTTTTTTTGCCAACGATGGAGCATTGGAA
AGGTCATAGACTTTGCAGCTTCTTTAGCCAGTCTTAAGAATGACAACAACAAATTAACAG
CTAAGAAATTGAGGTTGTGTCACATTACCTCAGGAGAAGCCTTACCCTTGGATCATATTT
TGGAAACCTGGATTGCTAAGGAGGATTGTCCTTTATATAATGGTGGAAATGTTATCTTGG
AATATCTTAATGATGAAGAACAGTTTTTAAAAAATGTGGATTCTTACTTGGAATAGTCTT
TGAAGATTCAAACCAGGAATCACAAGGAAAATTCAATGTTAATTTCTTTTATTGCAAGTA
TTATAAATTTTTTTATTTTTGAATTTTTGGGGGGAGTTCTCTTATGGTGCAGTGGATTAA
GGATCTGGCATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34784460|gb|AAH56877.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34784460|gb|AAH56877.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               184-420, gnl|bosTau2|chr14 (49965536-49965777)
               

               
               184-420, gnl|Hg17|chr8 (82777657-82777409)
               

               
               184-420, gnl|Mm7|chr3 (10349092-10348820)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-420, gnl|bosTau2|chr14 (49965536-49965777)
               

               
               184-420, gnl|Hg17|chr8 (82777657-82777409)
               

               
               184-420, gnl|Mm7|chr3 (10349092-10348820)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               col (0.195008)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               eje (0.0988338)

	184-420, gnl\|bosTau2\|chr14 (49965536-49965777)
	184-420, gnl\|Hg17\|chr8 (82777657-82777409)
	184-420, gnl\|Mm7\|chr3 (10349092-10348820)