Ss1.1-Emb1-C0005192_P18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACGTATTGCTGGACTCTGAAGGACACATTAAACTCACTGACTATGGCATGTGTAAGGA AGGATTACGGCCAGGAGATACAACCAGCACTTTCTGTGGCACTCCTAATTACATTGCTCC TGAAATTTTAAGAGGAGAAGATTATGGTTTCAGTGTTGACTGGTGGGCCCTTGGAGTACT AATGTTTGAGATGATGGCAGGAAGGTCTCCATTTGATATTGTTGGGAGCTCTGATAACCC TGATCAAAACACAGAGGATTATCTTTTTCAAGTTATTTTGGAAAAACAGATTCGCATACC ACGTTCTCTGTCTGTAAAAGCTGCAAGTGTCCTGAAGAGCTTCCTCAACAAGGACCCAAA GGAACGCTTGGGTTGTCATCCTCAGACAGGATTTGCTGATATCCAGGGACACCCATTCTT CCGAAATGTTGACTGGGATATGATGGAACAAAAGCAGGTGGTACCTCCGTTTAAACCAAA TATTTCTGGGGAATTTGGTTTGGACAACTTCGATTCTCAGTTTACTAATGAACCTGTCCA GCTCACTCCAGATGACGATGACATTGTGAGGAAGATTGATCAGTCTGAGTTTGAAGGCTT TGAGTACATCAATCCTCTGTTGATGTCTGCAGAAGAATGTGTCTGATCCTCCTTTCTCAG CTATGCATTTTGCTCATGTTGCCATTTAATGCATGGAGAAACTTGTTACCAGCCTGGATA CAATGAACCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACGTATTGCTGGACTCTGAAGGACACATTAAACTCACTGACTATGGCATGTGTAAGGA AGGATTACGGCCAGGAGATACAACCAGCACTTTCTGTGGCACTCCTAATTACATTGCTCC TGAAATTTTAAGAGGAGAAGATTATGGTTTCAGTGTTGACTGGTGGGCCCTTGGAGTACT AATGTTTGAGATGATGGCAGGAAGGTCTCCATTTGATATTGTTGGGAGCTCTGATAACCC TGATCAAAACACAGAGGATTATCTTTTTCAAGTTATTTTGGAAAAACAGATTCGCATACC ACGTTCTCTGTCTGTAAAAGCTGCAAGTGTCCTGAAGAGCTTCCTCAACAAGGACCCAAA GGAACGCTTGGGTTGTCATCCTCAGACAGGATTTGCTGATATCCAGGGACACCCATTCTT CCGAAATGTTGACTGGGATATGATGGAACAAAAGCAGGTGGTACCTCCGTTTAAACCAAA TATTTCTGGGGAATTTGGTTTGGACAACTTCGATTCTCAGTTTACTAATGAACCTGTCCA GCTCACTCCAGATGACGATGACATTGTGAGGAAGATTGATCAGTCTGAGTTTGAAGGCTT TGAGTACATCAATCCTCTGTTGATGTCTGCAGAAGAATGTGTCTGATCCTCCTTTCTCAG CTATGCATTTTGCTCATGTTGCCATTTAATGCATGGAGAAACTTGTTACCAGCCTGGATA CAATGAACCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 442-677, - strand, RNAz p=0.972952 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 442-677, - strand, RNAz p=0.972952 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 146-280, gnl|bosTau2|chr1 (62728898-62728764) | |
| 146-280, gnl|canFam2|chr34 (37835328-37835470) | |
| 146-280, gnl|canFam2|chr34 (37835464-37835341) | |
| 146-280, gnl|danRer3|chr2 (35028650-35028780) | |
| 146-280, gnl|danRer3|chr2 (35028777-35028654) | |
| 146-280, gnl|dasNov1|scaffold_8585 (1076-1214) | |
| 146-280, gnl|dasNov1|scaffold_8585 (1208-1085) | |
| 146-280, gnl|echTel1|scaffold_241188 (926-803) | |
| 146-280, gnl|echTel1|scaffold_241188 (801-924) | |
| 146-280, gnl|fr1|chrUn (18478988-18478852) | |
| 146-280, gnl|fr1|chrUn (18478856-18478979) | |
| 146-280, gnl|galGal2|chr9 (19291722-19291591) | |
| 146-280, gnl|galGal2|chr9 (19291597-19291720) | |
| 146-280, gnl|hg17|chr3 (171493867-171494005) | |
| 146-280, gnl|Hg17|chr3 (171493872-171494006) | |
| 146-280, gnl|hg17|chrX (100598987-100599110) | |
| 146-280, gnl|loxAfr1|scaffold_35960 (8442-8303) | |
| 146-280, gnl|loxAfr1|scaffold_35960 (8309-8432) | |
| 146-280, gnl|mm7|chr3 (30855691-30855829) | |
| 146-280, gnl|mm7|chr3 (30855820-30855700) | |
| 146-280, gnl|Mm7|chr3 (30855696-30855830) | |
| 146-280, gnl|monDom2|scaffold_52 (1814399-1814261) | |
| 146-280, gnl|monDom2|scaffold_52 (1814267-1814390) | |
| 146-280, gnl|oryCun1|scaffold_212926 (29838-29975) | |
| 146-280, gnl|oryCun1|scaffold_212926 (29966-29846) | |
| 146-280, gnl|panTro1|chr2 (174985999-174986137) | |
| 146-280, gnl|panTro1|chrX (103856207-103856330) | |
| 146-280, gnl|rheMac2|chr2 (116717116-116716978) | |
| 146-280, gnl|rheMac2|chr2 (116716987-116717107) | |
| 146-280, gnl|rn3|chr2 (116694521-116694384) | |
| 146-280, gnl|rn3|chr2 (116694392-116694512) | |
| 146-280, gnl|tetNig1|chr15_random (2880259-2880397) | |
| 146-280, gnl|tetNig1|chr15_random (2880391-2880268) | |
| 146-280, gnl|xenTro1|scaffold_3 (2534931-2534795) | |
| 146-280, gnl|xenTro1|scaffold_3 (2534799-2534922) | |
| 442-558, gnl|bosTau2|chr1 (62725000-62724884) | |
| 442-558, gnl|Hg17|chr3 (171499484-171499600) | |
| 442-558, gnl|Mm7|chr3 (30858977-30859093) | |
| 559-732, gnl|bosTau2|chr1 (62720918-62720745) | |
| 559-732, gnl|Hg17|chr3 (171503530-171503703) | |
| 559-732, gnl|Mm7|chr3 (30862196-30862344) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-280, gnl|bosTau2|chr1 (62728898-62728764) | |
| 146-280, gnl|canFam2|chr34 (37835328-37835470) | |
| 146-280, gnl|canFam2|chr34 (37835464-37835341) | |
| 146-280, gnl|danRer3|chr2 (35028650-35028780) | |
| 146-280, gnl|danRer3|chr2 (35028777-35028654) | |
| 146-280, gnl|dasNov1|scaffold_8585 (1076-1214) | |
| 146-280, gnl|dasNov1|scaffold_8585 (1208-1085) | |
| 146-280, gnl|echTel1|scaffold_241188 (926-803) | |
| 146-280, gnl|echTel1|scaffold_241188 (801-924) | |
| 146-280, gnl|fr1|chrUn (18478988-18478852) | |
| 146-280, gnl|fr1|chrUn (18478856-18478979) | |
| 146-280, gnl|galGal2|chr9 (19291722-19291591) | |
| 146-280, gnl|galGal2|chr9 (19291597-19291720) | |
| 146-280, gnl|hg17|chr3 (171493867-171494005) | |
| 146-280, gnl|Hg17|chr3 (171493872-171494006) | |
| 146-280, gnl|hg17|chrX (100598987-100599110) | |
| 146-280, gnl|loxAfr1|scaffold_35960 (8442-8303) | |
| 146-280, gnl|loxAfr1|scaffold_35960 (8309-8432) | |
| 146-280, gnl|mm7|chr3 (30855691-30855829) | |
| 146-280, gnl|mm7|chr3 (30855820-30855700) | |
| 146-280, gnl|Mm7|chr3 (30855696-30855830) | |
| 146-280, gnl|monDom2|scaffold_52 (1814399-1814261) | |
| 146-280, gnl|monDom2|scaffold_52 (1814267-1814390) | |
| 146-280, gnl|oryCun1|scaffold_212926 (29838-29975) | |
| 146-280, gnl|oryCun1|scaffold_212926 (29966-29846) | |
| 146-280, gnl|panTro1|chr2 (174985999-174986137) | |
| 146-280, gnl|panTro1|chrX (103856207-103856330) | |
| 146-280, gnl|rheMac2|chr2 (116717116-116716978) | |
| 146-280, gnl|rheMac2|chr2 (116716987-116717107) | |
| 146-280, gnl|rn3|chr2 (116694521-116694384) | |
| 146-280, gnl|rn3|chr2 (116694392-116694512) | |
| 146-280, gnl|tetNig1|chr15_random (2880259-2880397) | |
| 146-280, gnl|tetNig1|chr15_random (2880391-2880268) | |
| 146-280, gnl|xenTro1|scaffold_3 (2534931-2534795) | |
| 146-280, gnl|xenTro1|scaffold_3 (2534799-2534922) | |
| 442-558, gnl|bosTau2|chr1 (62725000-62724884) | |
| 442-558, gnl|Hg17|chr3 (171499484-171499600) | |
| 442-558, gnl|Mm7|chr3 (30858977-30859093) | |
| 559-732, gnl|bosTau2|chr1 (62720918-62720745) | |
| 559-732, gnl|Hg17|chr3 (171503530-171503703) | |
| 559-732, gnl|Mm7|chr3 (30862196-30862344) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) |