Non-Coding RNA Search

Ss1.1-Emb1-C0005192_P19.5

Sequence:


               
               GGAGCAGCATGTGGCTTTAGTGACCTCTACTTTGCCGCCCTTGCCTTTGCCGCCCATGCT
GCCTGAAGATAAAGATGCTGATAGCTTACGGGGAAATATTTCAGTAAAAGCAGTTAAAAA
AGAAGTGGAAAAGAAACTACGATGTCTGCTTGCTGATTTACCACTGCCCCCCGAGCTGCC
AGGAGGGGATGATCTCTCAGCGAGTCCAGAGGAAAAGAAAACAGCCACGCAGTTACATAG
TAAAAGGAGGCCTAAGTATGTGCTTGCTTTCTCCCTGCTCCTAAATTGGCCAGAGATGAT
TCTGGATCATCATTAAATCATAAAACACAAAACTAAGATTTAAAATAATAAAAAGTGTAC
TTATTCTTTCAACTTATAAGTATATGAATAAATTTTATTGGAGCTTTGAAAAAATTTTTT
TCGTAATTGCCTGAGTCCCTATTCAAAATGACTAATATAACCAAATTTAATTTTCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCAGCATGTGGCTTTAGTGACCTCTACTTTGCCGCCCTTGCCTTTGCCGCCCATGCT
GCCTGAAGATAAAGATGCTGATAGCTTACGGGGAAATATTTCAGTAAAAGCAGTTAAAAA
AGAAGTGGAAAAGAAACTACGATGTCTGCTTGCTGATTTACCACTGCCCCCCGAGCTGCC
AGGAGGGGATGATCTCTCAGCGAGTCCAGAGGAAAAGAAAACAGCCACGCAGTTACATAG
TAAAAGGAGGCCTAAGTATGTGCTTGCTTTCTCCCTGCTCCTAAATTGGCCAGAGATGAT
TCTGGATCATCATTAAATCATAAAACACAAAACTAAGATTTAAAATAATAAAAAGTGTAC
TTATTCTTTCAACTTATAAGTATATGAATAAATTTTATTGGAGCTTTGAAAAAATTTTTT
TCGTAATTGCCTGAGTCCCTATTCAAAATGACTAATATAACCAAATTTAATTTTCTCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-240, - strand, RNAz p=0.683665

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.683665

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               82-477, gnl|bosTau2|chr4 (47735521-47735142)
               

               
               82-477, gnl|Hg17|chr7 (39810330-39810713)
               

               
               82-477, gnl|Mm7|chr13 (17128381-17128000)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-477, gnl|bosTau2|chr4 (47735521-47735142)
               

               
               82-477, gnl|Hg17|chr7 (39810330-39810713)
               

               
               82-477, gnl|Mm7|chr13 (17128381-17128000)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               nlu (0.191681)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               nlu (0.191681)

	82-477, gnl\|bosTau2\|chr4 (47735521-47735142)
	82-477, gnl\|Hg17\|chr7 (39810330-39810713)
	82-477, gnl\|Mm7\|chr13 (17128381-17128000)