Ss1.1-Emb1-C0005193_C19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATAAGGATTTGAAACCACAGACATTTAGAAATGCATATGACATACCAAGACGGAATCT TCTGGATCACTTAACAAGAATGAGATCTAATCTTTTGAAGAGCACCCGTAGATTTCTTAA AGGACAGGATGAAGATCAAGTGCACAGTGTTCCTATAGCACAAATGGGGAATTACCAGGA ATACCTCAAGCAAGTACCTTCTCCACTAAGAGAACTTGATCCTGATCAGCCTCGAAGGTT GCATACATTTGGCAACCCCTTTAAGCTGGATAAAAAGGGAATGATGATAGATGAGGCAGA TGAATTTGTGGCTGGACCTCAAAATAAACATAAACGACCTGGAGAACCAAATATGCAAGG CATCCCTAAAAGACGCCGCTGTATGTCTCCACTACTGAGAGGCAGACAGCAGAATCCCGT TGTGAACAATCATATTGGAGGAAAAGGGCCACCTGTACCTATGACTCAAGCACAGCCAGA TCTTATTAAACCCCTTCCTCTTCATAAAGTTTCAGAAGCCACTAATGATTCGACAATAGA TGATGTAGTTGAAAATCATGTTGCAGACCAACTTTCTTCAGATATCACACCAAATGCAAT GGATACTGAATTTTCAACGTCTTCTCCAGCCAATTTATTGGAACGACCAGCCAATCATAC AGAGGGTCTTGGTCATGACCATTTAGGAACTAATGACCTCACTGTTGGTGGATTTTTAGA AAATCATGAGGAGCCCAGAGATAAAGAACAATGTCCTGAAGAGAATATACCAGCATCCTC ACTCAACAAAGGAAAGAAACTAATGCATTGCAGAAGCCATGAAGAGGTCAACACTGAACT AAAAGCACAAATAATGAAAGAGATCCGAAAGCCAGGAAGAAAATATGAAAGAATCTTCAC TTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGACTAATATTTTTACAAAATGTCAT TAAAGAAGCATCAAGGTTTAAAAAACGAATGCTAATAGAACAACTGGAGAACTTCTTGGA TGAAATTCATCGAAGAGCCAATCAGATCAACCACATTAACAGCAATTAAAAGAAAACAGA ATGTGGCCACTTATTTCACTACCTTCTCCAAATACAAAGTAAATACAAGACTGTTGTGAT CTTGCATTCATTTTTTGACATGCATTGTTGGCTTTTTGAAATACTAAGAGCAAGTCTACA GATCCTTTTTCCATCATTTTACAGTGACCTTTTCTTCATTTTGGTTTATTTTTGTAATGT GAAAAGTATCACTCTAAAAAACATTTTTATTTAACAAACTAAAAATACTCCTCCAAATCT CTTGCTTGTCATTGACTCTTGCGTGTCAATTTCCCTCAGGTTCTATTTTCTTAAACCAAC CTTTAAAACTGTCACCTCTGTTAAGGTTGAACTTTGCCAAAAAAATAAAAAAGAAGTTAC TTTGTAATTTTTGGGGAAAAAGCACATACATTAAAACTAGGCAATGTTTTGTATATACAG TTATTTTGGATATATTATTGTAAGTTGTACAAATGTATTTTGAAGAATATTTAAGAAAAG CACTTTTGTTATTCCATCAATAAATGCTCTATTTTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATAAGGATTTGAAACCACAGACATTTAGAAATGCATATGACATACCAAGACGGAATCT TCTGGATCACTTAACAAGAATGAGATCTAATCTTTTGAAGAGCACCCGTAGATTTCTTAA AGGACAGGATGAAGATCAAGTGCACAGTGTTCCTATAGCACAAATGGGGAATTACCAGGA ATACCTCAAGCAAGTACCTTCTCCACTAAGAGAACTTGATCCTGATCAGCCTCGAAGGTT GCATACATTTGGCAACCCCTTTAAGCTGGATAAAAAGGGAATGATGATAGATGAGGCAGA TGAATTTGTGGCTGGACCTCAAAATAAACATAAACGACCTGGAGAACCAAATATGCAAGG CATCCCTAAAAGACGCCGCTGTATGTCTCCACTACTGAGAGGCAGACAGCAGAATCCCGT TGTGAACAATCATATTGGAGGAAAAGGGCCACCTGTACCTATGACTCAAGCACAGCCAGA TCTTATTAAACCCCTTCCTCTTCATAAAGTTTCAGAAGCCACTAATGATTCGACAATAGA TGATGTAGTTGAAAATCATGTTGCAGACCAACTTTCTTCAGATATCACACCAAATGCAAT GGATACTGAATTTTCAACGTCTTCTCCAGCCAATTTATTGGAACGACCAGCCAATCATAC AGAGGGTCTTGGTCATGACCATTTAGGAACTAATGACCTCACTGTTGGTGGATTTTTAGA AAATCATGAGGAGCCCAGAGATAAAGAACAATGTCCTGAAGAGAATATACCAGCATCCTC ACTCAACAAAGGAAAGAAACTAATGCATTGCAGAAGCCATGAAGAGGTCAACACTGAACT AAAAGCACAAATAATGAAAGAGATCCGAAAGCCAGGAAGAAAATATGAAAGAATCTTCAC TTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGACTAATATTTTTACAAAATGTCAT TAAAGAAGCATCAAGGTTTAAAAAACGAATGCTAATAGAACAACTGGAGAACTTCTTGGA TGAAATTCATCGAAGAGCCAATCAGATCAACCACATTAACAGCAATTAAAAGAAAACAGA ATGTGGCCACTTATTTCACTACCTTCTCCAAATACAAAGTAAATACAAGACTGTTGTGAT CTTGCATTCATTTTTTGACATGCATTGTTGGCTTTTTGAAATACTAAGAGCAAGTCTACA GATCCTTTTTCCATCATTTTACAGTGACCTTTTCTTCATTTTGGTTTATTTTTGTAATGT GAAAAGTATCACTCTAAAAAACATTTTTATTTAACAAACTAAAAATACTCCTCCAAATCT CTTGCTTGTCATTGACTCTTGCGTGTCAATTTCCCTCAGGTTCTATTTTCTTAAACCAAC CTTTAAAACTGTCACCTCTGTTAAGGTTGAACTTTGCCAAAAAAATAAAAAAGAAGTTAC TTTGTAATTTTTGGGGAAAAAGCACATACATTAAAACTAGGCAATGTTTTGTATATACAG TTATTTTGGATATATTATTGTAAGTTGTACAAATGTATTTTGAAGAATATTTAAGAAAAG CACTTTTGTTATTCCATCAATAAATGCTCTATTTTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1281-1378, - strand, RNAz p=0.941493 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1281-1378, - strand, RNAz p=0.941493 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 6-134, gnl|bosTau2|chr12 (10566433-10566305) | |
| 6-134, gnl|canFam2|chr22 (3567267-3567142) | |
| 6-134, gnl|danRer3|chr14 (52895086-52894965) | |
| 6-134, gnl|dasNov1|scaffold_174187 (2665-2791) | |
| 6-134, gnl|echTel1|scaffold_302545 (5617-5496) | |
| 6-134, gnl|fr1|chrUn (212971902-212971951) | |
| 6-134, gnl|galGal2|chr1 (162209926-162210051) | |
| 6-134, gnl|Hg17|chr13 (50848313-50848185) | |
| 6-134, gnl|hg17|chr5 (39755775-39755900) | |
| 6-134, gnl|loxAfr1|scaffold_44876 (12270-12392) | |
| 6-134, gnl|mm7|chr14 (57569388-57569513) | |
| 6-134, gnl|Mm7|chr14 (57569515-57569387) | |
| 6-134, gnl|monDom2|scaffold_15 (55090464-55090340) | |
| 6-134, gnl|oryCun1|scaffold_108890 (3907-4032) | |
| 6-134, gnl|panTro1|chr4 (76967701-76967576) | |
| 6-134, gnl|rheMac2|chr6 (39542141-39542266) | |
| 6-134, gnl|rn3|chr15 (41968662-41968787) | |
| 6-134, gnl|tetNig1|chr2 (18285289-18285410) | |
| 6-134, gnl|xenTro1|scaffold_223 (1318282-1318157) | |
| 508-881, gnl|bosTau2|chr12 (10562544-10562171) | |
| 508-881, gnl|Hg17|chr13 (50841449-50841076) | |
| 508-881, gnl|Mm7|chr14 (57563165-57562796) | |
| 969-1596, gnl|bosTau2|chr12 (10559302-10558673) | |
| 969-1596, gnl|Hg17|chr13 (50837989-50837364) | |
| 969-1596, gnl|Mm7|chr14 (57559884-57559212) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-134, gnl|bosTau2|chr12 (10566433-10566305) | |
| 6-134, gnl|canFam2|chr22 (3567267-3567142) | |
| 6-134, gnl|danRer3|chr14 (52895086-52894965) | |
| 6-134, gnl|dasNov1|scaffold_174187 (2665-2791) | |
| 6-134, gnl|echTel1|scaffold_302545 (5617-5496) | |
| 6-134, gnl|fr1|chrUn (212971902-212971951) | |
| 6-134, gnl|galGal2|chr1 (162209926-162210051) | |
| 6-134, gnl|Hg17|chr13 (50848313-50848185) | |
| 6-134, gnl|hg17|chr5 (39755775-39755900) | |
| 6-134, gnl|loxAfr1|scaffold_44876 (12270-12392) | |
| 6-134, gnl|mm7|chr14 (57569388-57569513) | |
| 6-134, gnl|Mm7|chr14 (57569515-57569387) | |
| 6-134, gnl|monDom2|scaffold_15 (55090464-55090340) | |
| 6-134, gnl|oryCun1|scaffold_108890 (3907-4032) | |
| 6-134, gnl|panTro1|chr4 (76967701-76967576) | |
| 6-134, gnl|rheMac2|chr6 (39542141-39542266) | |
| 6-134, gnl|rn3|chr15 (41968662-41968787) | |
| 6-134, gnl|tetNig1|chr2 (18285289-18285410) | |
| 6-134, gnl|xenTro1|scaffold_223 (1318282-1318157) | |
| 508-881, gnl|bosTau2|chr12 (10562544-10562171) | |
| 508-881, gnl|Hg17|chr13 (50841449-50841076) | |
| 508-881, gnl|Mm7|chr14 (57563165-57562796) | |
| 969-1596, gnl|bosTau2|chr12 (10559302-10558673) | |
| 969-1596, gnl|Hg17|chr13 (50837989-50837364) | |
| 969-1596, gnl|Mm7|chr14 (57559884-57559212) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| lin (0.436808) | |
| tes (0.415628) | |
| sin (0.349895) | |
| csk (0.281492) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| col (0.195008) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.436808) | |
| tes (0.415628) | |
| sin (0.349895) | |
| csk (0.281492) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| col (0.195008) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) |