Non-Coding RNA Search

Ss1.1-Emb1-C0005193_I07.5

Sequence:


               
               GGGCCGAGTGGCCGTGAGGACAGCATGTCCGGGTCAGAGGTCACCCTGCACACAGGCCAT
GTGACTGATGGGCGAGGCCCCTGGAAAGGGCGGCCGTATCAGTGCAGCACCTGTGACAGG
AGCTTCAAATGCTACTCGGATGCGGTGAAGCATCAGAGCATCCACTCTGGGGAGAAGCCC
TACGAGTGCAGCGACTGCGGGAAGGCCTTCATCCACAGCTCCCACGTCGTCAGGCACCAG
CGCACCCACAATGGGGAGAGGCCGTACATTTGCAAGGAGTGTGGGAAAGCCTTCAGCCAG
AGCTTTAACCTCGTCAGACACCAGAGGAGCCACACGGGAGAAGCCCTTCCGCTGTGCCGA
GTGCGGCAGGGCCTTCCGCTTGAGCTTTCATCTCATCCAGCACCGGCGGGTTCATGGCAC
GGAGTGACCCTGTGGTGGGGTGAATGCGCGGCAGAAAACTGAGTAGCCGCCTGGCTTTGC
CCCGCGTCGGGTCCGCGGGCTTTGTTCTGAGGGCGGTGGGGGAGGGAGAGAAGCCTGGGG
AAAGCAGGCTCCACCAGGGAAGCAGAGGTTTTCCCAAAGGAAAGGAGCGTGCTGGCACCT
CTGAAATCAATTTTTCATTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGAGTGGCCGTGAGGACAGCATGTCCGGGTCAGAGGTCACCCTGCACACAGGCCAT
GTGACTGATGGGCGAGGCCCCTGGAAAGGGCGGCCGTATCAGTGCAGCACCTGTGACAGG
AGCTTCAAATGCTACTCGGATGCGGTGAAGCATCAGAGCATCCACTCTGGGGAGAAGCCC
TACGAGTGCAGCGACTGCGGGAAGGCCTTCATCCACAGCTCCCACGTCGTCAGGCACCAG
CGCACCCACAATGGGGAGAGGCCGTACATTTGCAAGGAGTGTGGGAAAGCCTTCAGCCAG
AGCTTTAACCTCGTCAGACACCAGAGGAGCCACACGGGAGAAGCCCTTCCGCTGTGCCGA
GTGCGGCAGGGCCTTCCGCTTGAGCTTTCATCTCATCCAGCACCGGCGGGTTCATGGCAC
GGAGTGACCCTGTGGTGGGGTGAATGCGCGGCAGAAAACTGAGTAGCCGCCTGGCTTTGC
CCCGCGTCGGGTCCGCGGGCTTTGTTCTGAGGGCGGTGGGGGAGGGAGAGAAGCCTGGGG
AAAGCAGGCTCCACCAGGGAAGCAGAGGTTTTCCCAAAGGAAAGGAGCGTGCTGGCACCT
CTGAAATCAATTTTTCATTTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57095672|ref|XP_539196.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57095672|ref|XP_539196.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               15-161, + strand, RNAz p=0.921989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-161, + strand, RNAz p=0.921989

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               15-448, gnl|bosTau2|chr14 (447434-447870)
               

               
               15-448, gnl|Hg17|chr8 (144449499-144449947)
               


               
               92-392, gnl|bosTau2|chr10 (8996338-8996038)
               

               
               92-392, gnl|Hg17|chr19 (42818059-42817759)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-448, gnl|bosTau2|chr14 (447434-447870)
               

               
               15-448, gnl|Hg17|chr8 (144449499-144449947)
               


               
               92-392, gnl|bosTau2|chr10 (8996338-8996038)
               

               
               92-392, gnl|Hg17|chr19 (42818059-42817759)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	15-448, gnl\|bosTau2\|chr14 (447434-447870)
	15-448, gnl\|Hg17\|chr8 (144449499-144449947)

	92-392, gnl\|bosTau2\|chr10 (8996338-8996038)
	92-392, gnl\|Hg17\|chr19 (42818059-42817759)