Non-Coding RNA Search

Ss1.1-Emb1-C0005193_M01.5

Sequence:


               
               GATTTATTAGGCAGCTTATTGTTCCGAATGAGAAGAGTGGAGCTTTAAGTAAATACGCCA
AAAAAATATTCCTGGCGCAGAAACCCGCACCACTGCTTGAGTCTCCTTTTAAAGATAGGG
ATCATTTCCAGCTTGGCACTTTATCTCATACTCTCAACACTAAAGCTACTGGGTACCTGG
AATTATCTAATTGGCCAGAGGTGGCGCCTGACCCATCAGTTCGAAATGTAGAAGTAATAG
AGTTGGCAAAAGAATGGACCCCAGCAGGAAAAGCAAAGAAAGAGAAACCTGATAAGAAAT
TTTACTCTGAATCTGAAGAAGAAGAGGATTCTTCAGAGAGCAGCAGTGACAGTGAGAGTG
AATCTGGAAGTGAAAGTGGAGAACAAGACGAGGAAGGAGACAGCAGTGAGGACAGCAGTG
AGGACTCCAGTGAGCACCAGAGTGAGAGTGGAAGTGAGTCAGAAGCAGAAAACAAAAGAG
CAGGCCAGAAGAGCTCCAGAACCAAAGGAAAAAGAGATTCTGAAGATGTGGATAAGGAAA
ATGAAAACTCTAAAACTTCAGATTCCTCCGATGCTGAATCTAGTTCAATAGAAGGCAGTT
CTTCAGGCTCTGAATCAGAATCAGTATCTGAAAGTGAATCTGAATCAAGAAAAGTTACTA
AGATTATCACTTGGCACAGCTCTGCAGAGAAATTACAAACTTTCTTTAACCTGACCCTTT
CCAACCAAAATTAGAGGCTTCTGTGTTATGAGTACAGCATTTTTGTTCAAGGCCAGGATG
TGACAAGAAAGGCTTTTACCAAAGGGGATGTAAAGGATGTGACAGAAATTAGGCAAAGGA
ATATAAATGTACATGCACCATAAGAAATTGAGACTAACATGCTTTTTAAAAAATATTAGG
CACTTTGGATAATAGAGTTTTTTTAAAGGTTTAGTTAAAGGGTGTACATTCTTATAGTCA
ATAAAAATGCATTCGCTATGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTATTAGGCAGCTTATTGTTCCGAATGAGAAGAGTGGAGCTTTAAGTAAATACGCCA
AAAAAATATTCCTGGCGCAGAAACCCGCACCACTGCTTGAGTCTCCTTTTAAAGATAGGG
ATCATTTCCAGCTTGGCACTTTATCTCATACTCTCAACACTAAAGCTACTGGGTACCTGG
AATTATCTAATTGGCCAGAGGTGGCGCCTGACCCATCAGTTCGAAATGTAGAAGTAATAG
AGTTGGCAAAAGAATGGACCCCAGCAGGAAAAGCAAAGAAAGAGAAACCTGATAAGAAAT
TTTACTCTGAATCTGAAGAAGAAGAGGATTCTTCAGAGAGCAGCAGTGACAGTGAGAGTG
AATCTGGAAGTGAAAGTGGAGAACAAGACGAGGAAGGAGACAGCAGTGAGGACAGCAGTG
AGGACTCCAGTGAGCACCAGAGTGAGAGTGGAAGTGAGTCAGAAGCAGAAAACAAAAGAG
CAGGCCAGAAGAGCTCCAGAACCAAAGGAAAAAGAGATTCTGAAGATGTGGATAAGGAAA
ATGAAAACTCTAAAACTTCAGATTCCTCCGATGCTGAATCTAGTTCAATAGAAGGCAGTT
CTTCAGGCTCTGAATCAGAATCAGTATCTGAAAGTGAATCTGAATCAAGAAAAGTTACTA
AGATTATCACTTGGCACAGCTCTGCAGAGAAATTACAAACTTTCTTTAACCTGACCCTTT
CCAACCAAAATTAGAGGCTTCTGTGTTATGAGTACAGCATTTTTGTTCAAGGCCAGGATG
TGACAAGAAAGGCTTTTACCAAAGGGGATGTAAAGGATGTGACAGAAATTAGGCAAAGGA
ATATAAATGTACATGCACCATAAGAAATTGAGACTAACATGCTTTTTAAAAAATATTAGG
CACTTTGGATAATAGAGTTTTTTTAAAGGTTTAGTTAAAGGGTGTACATTCTTATAGTCA
ATAAAAATGCATTCGCTATGTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-712, + strand, RNAz p=0.999033

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-712, + strand, RNAz p=0.999033

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               513-662, BW955029 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW955029.1|), blast E-value=0, identity=98.67% 
               

               
               516-655, CJ440369 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ440369.1|), blast E-value=8.00001e-41, identity=90.71% 
               

               
               516-662, LB02933.CR_I11 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV924166.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB03026.CR_J23 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932686.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB0308.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV934961.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB03044.CR_P05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375047.1|), 
blast E-value=3e-40, identity=89.8%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               513-662, BW955029 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW955029.1|), blast E-value=0, identity=98.67% 
               

               
               516-655, CJ440369 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ440369.1|), blast E-value=8.00001e-41, identity=90.71% 
               

               
               516-662, LB02933.CR_I11 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV924166.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB03026.CR_J23 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932686.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB0308.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV934961.1|), 
blast E-value=3e-40, identity=89.8% 
               

               
               516-662, LB03044.CR_P05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375047.1|), 
blast E-value=3e-40, identity=89.8%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX538041, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX538041, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               107-249, gnl|bosTau2|chr10 (3173828-3173685)
               

               
               107-249, gnl|canFam2|chr3 (31528605-31528511)
               

               
               107-249, gnl|danRer3|chr25 (4757504-4757598)
               

               
               107-249, gnl|echTel1|scaffold_296791 (34344-34438)
               

               
               107-249, gnl|fr1|chrUn (209981186-209981279)
               

               
               107-249, gnl|galGal2|chr13_random (565448-565542)
               

               
               107-249, gnl|hg17|chr5 (77459605-77459699)
               

               
               107-249, gnl|Hg17|chr5 (77459749-77459606)
               

               
               107-249, gnl|loxAfr1|scaffold_3992 (2135-2041)
               

               
               107-249, gnl|mm7|chr13 (91535927-91535833)
               

               
               107-249, gnl|Mm7|chr13 (91535781-91535924)
               

               
               107-249, gnl|monDom2|scaffold_27 (38309326-38309232)
               

               
               107-249, gnl|oryCun1|scaffold_201281 (149054-149148)
               

               
               107-249, gnl|rheMac2|chr6 (74345710-74345804)
               

               
               107-249, gnl|rn3|chr2 (24702932-24702838)
               

               
               107-249, gnl|tetNig1|chrUn_random (1665952-1666045)
               

               
               107-249, gnl|xenTro1|scaffold_1510 (17589-17495)
               


               
               513-712, gnl|bosTau2|chr10 (3161756-3161559)
               

               
               513-712, gnl|Hg17|chr5 (77441936-77441745)
               

               
               513-712, gnl|Mm7|chr13 (91546202-91546367)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-249, gnl|bosTau2|chr10 (3173828-3173685)
               

               
               107-249, gnl|canFam2|chr3 (31528605-31528511)
               

               
               107-249, gnl|danRer3|chr25 (4757504-4757598)
               

               
               107-249, gnl|echTel1|scaffold_296791 (34344-34438)
               

               
               107-249, gnl|fr1|chrUn (209981186-209981279)
               

               
               107-249, gnl|galGal2|chr13_random (565448-565542)
               

               
               107-249, gnl|hg17|chr5 (77459605-77459699)
               

               
               107-249, gnl|Hg17|chr5 (77459749-77459606)
               

               
               107-249, gnl|loxAfr1|scaffold_3992 (2135-2041)
               

               
               107-249, gnl|mm7|chr13 (91535927-91535833)
               

               
               107-249, gnl|Mm7|chr13 (91535781-91535924)
               

               
               107-249, gnl|monDom2|scaffold_27 (38309326-38309232)
               

               
               107-249, gnl|oryCun1|scaffold_201281 (149054-149148)
               

               
               107-249, gnl|rheMac2|chr6 (74345710-74345804)
               

               
               107-249, gnl|rn3|chr2 (24702932-24702838)
               

               
               107-249, gnl|tetNig1|chrUn_random (1665952-1666045)
               

               
               107-249, gnl|xenTro1|scaffold_1510 (17589-17495)
               


               
               513-712, gnl|bosTau2|chr10 (3161756-3161559)
               

               
               513-712, gnl|Hg17|chr5 (77441936-77441745)
               

               
               513-712, gnl|Mm7|chr13 (91546202-91546367)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	513-662, BW955029 full-length enriched swine cDNA library, adult alveolar (dbj\|BW955029.1\|), blast E-value=0, identity=98.67%
	516-655, CJ440369 macaque brain cDNA library QccE Macaca fascicularis cDNA (dbj\|CJ440369.1\|), blast E-value=8.00001e-41, identity=90.71%
	516-662, LB02933.CR_I11 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV924166.1\|), blast E-value=3e-40, identity=89.8%
	516-662, LB03026.CR_J23 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV932686.1\|), blast E-value=3e-40, identity=89.8%
	516-662, LB0308.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV934961.1\|), blast E-value=3e-40, identity=89.8%
	516-662, LB03044.CR_P05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE375047.1\|), blast E-value=3e-40, identity=89.8%

	107-249, gnl\|bosTau2\|chr10 (3173828-3173685)
	107-249, gnl\|canFam2\|chr3 (31528605-31528511)
	107-249, gnl\|danRer3\|chr25 (4757504-4757598)
	107-249, gnl\|echTel1\|scaffold_296791 (34344-34438)
	107-249, gnl\|fr1\|chrUn (209981186-209981279)
	107-249, gnl\|galGal2\|chr13_random (565448-565542)
	107-249, gnl\|hg17\|chr5 (77459605-77459699)
	107-249, gnl\|Hg17\|chr5 (77459749-77459606)
	107-249, gnl\|loxAfr1\|scaffold_3992 (2135-2041)
	107-249, gnl\|mm7\|chr13 (91535927-91535833)
	107-249, gnl\|Mm7\|chr13 (91535781-91535924)
	107-249, gnl\|monDom2\|scaffold_27 (38309326-38309232)
	107-249, gnl\|oryCun1\|scaffold_201281 (149054-149148)
	107-249, gnl\|rheMac2\|chr6 (74345710-74345804)
	107-249, gnl\|rn3\|chr2 (24702932-24702838)
	107-249, gnl\|tetNig1\|chrUn_random (1665952-1666045)
	107-249, gnl\|xenTro1\|scaffold_1510 (17589-17495)

	513-712, gnl\|bosTau2\|chr10 (3161756-3161559)
	513-712, gnl\|Hg17\|chr5 (77441936-77441745)
	513-712, gnl\|Mm7\|chr13 (91546202-91546367)