Ss1.1-Emb1-C0005194_B18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGAGAGTGAAGGATATGGCTGGCTCCTGGAACATCTAGTGTTCCTGCTCCAACTGCA GGAAACGCTGAGAAGTTGGAAATTGCAAAGAGATTGGCTCTTAGAATCAATGCTCAGAAG AATTTGGGCATTGAGTCTCAGGTAGATGTGATGCAACAGGCCACCAATGCAATTCTCAGA GGTGGCACCATCCTGGCTCCCACTGTATCTGCAAAAACCATTGCAGAGCAACTTGCTGAA AAGATCAATGCCAAGCTCAATTATGTGCCTTTGGAGAAACAAGAGGAGGAAAGACAAGAT GGTGGACAGAATGAATCTTTTAAGAGATATGAAGAAGAATTAGAGATTAATGACTTCCCA CAGACTGCTAGGTGGAAAGTTACTTCTAAGGAAGCTCTGCAGAGAATCAGTGAATATTCT GAAGCCGCAATTACAATCAGAGGAACATACTTCCCCCCTGGCAAAGAACCCAAGGAAGGA GAGCGGAAAATTTACTTGGCAATTGAAAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAG GCAGAAATCACCAGGCTCATAAAAGAAGAACTGATCCGGCTGCAAAATTCATACCAACCA ACAAACAAAGGAAGATACAAAGTCTTATAAAACACATGGAAGAAACTTTTTACTTGTGCT GTTCTGTGATACACGTGGCAATTGTTGTCTGCAGTTTACAATGTATTTTAAATTAAGATT TTTAATTCTGTCTTGCTGATTTTTTTTAAAACACAAGAAACCAGTATTTGCTAAAGAAAT CTTTCAGTAAGTACTGCCAGAATTATCAAACTACATGTAAAACAGACCTGTTTTCATAGT ACAGTATCCTTTAATGTAAAGCTGAAATATCAGTATTTTAAATATCTGGATAATATGCCA GAAGTTTAAGAAAACTGAAATATTTGGACTTTCCATTGAAGGTAGAGTATACAAGTTGCT AAGAGGCTATTCACCTTATCTTCTTGCAATGAAATTGCGATCATCTCCTCAGAACAGGTA AAATTCTATAATTTTGTGTCCCTACCTTGAGCTTAAATCTTACTCAACTCAGTGGAACAG TATGAACTGGATTTAAGAATATTACAATAGAATTTTTACAAAATGGGTTCAGTGTTTTTG TTTCAGTTTTTATCATCCTATATGGGCCTTCGCTGGACTGCTTTTTGGTTTTGTAAAAGT GAAGACTTGTAGTATAAGAATTTTTTGCATTTCTTTATACCAGTGAGAGTTTTAATATTT ACTTCTTTTAGGTTCCCCTCACAACCTCTGGCTCCGTGCCTAGCTACTAACTCTTTTCTA ATCGTCCTTACAAGAAAGTGATTTGTAGCCTGTAAATATTAAGACGACTGCTCTTCTTCT GAAAGTGTGTTTATACACCTGTACATACAAACACCCTACCAATCTGATTTTTCTTCAGGA TTATGAGTAGGTTCTGAATTTTCTTTCTTATAAGTTTTCAAGCATAATGGTACCCACATT TTAGACTTTGACTTTAAGCATTTCTCAGTGAAATTTAGTTCACAAAGAATCTTAAATTAT GTCTTTGAGTCTTTAGATACATTTCCTGAATATTTTAATTTAAAATTGTTAGAATTGGAT CACCTAATATTCTTTTCAAGACTCCTGGTGTATTAGAACTTCATATTGTTGTCACTCCTT GAAAAAAATAAAACTCTCAGGAATTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGAGAGTGAAGGATATGGCTGGCTCCTGGAACATCTAGTGTTCCTGCTCCAACTGCA GGAAACGCTGAGAAGTTGGAAATTGCAAAGAGATTGGCTCTTAGAATCAATGCTCAGAAG AATTTGGGCATTGAGTCTCAGGTAGATGTGATGCAACAGGCCACCAATGCAATTCTCAGA GGTGGCACCATCCTGGCTCCCACTGTATCTGCAAAAACCATTGCAGAGCAACTTGCTGAA AAGATCAATGCCAAGCTCAATTATGTGCCTTTGGAGAAACAAGAGGAGGAAAGACAAGAT GGTGGACAGAATGAATCTTTTAAGAGATATGAAGAAGAATTAGAGATTAATGACTTCCCA CAGACTGCTAGGTGGAAAGTTACTTCTAAGGAAGCTCTGCAGAGAATCAGTGAATATTCT GAAGCCGCAATTACAATCAGAGGAACATACTTCCCCCCTGGCAAAGAACCCAAGGAAGGA GAGCGGAAAATTTACTTGGCAATTGAAAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAG GCAGAAATCACCAGGCTCATAAAAGAAGAACTGATCCGGCTGCAAAATTCATACCAACCA ACAAACAAAGGAAGATACAAAGTCTTATAAAACACATGGAAGAAACTTTTTACTTGTGCT GTTCTGTGATACACGTGGCAATTGTTGTCTGCAGTTTACAATGTATTTTAAATTAAGATT TTTAATTCTGTCTTGCTGATTTTTTTTAAAACACAAGAAACCAGTATTTGCTAAAGAAAT CTTTCAGTAAGTACTGCCAGAATTATCAAACTACATGTAAAACAGACCTGTTTTCATAGT ACAGTATCCTTTAATGTAAAGCTGAAATATCAGTATTTTAAATATCTGGATAATATGCCA GAAGTTTAAGAAAACTGAAATATTTGGACTTTCCATTGAAGGTAGAGTATACAAGTTGCT AAGAGGCTATTCACCTTATCTTCTTGCAATGAAATTGCGATCATCTCCTCAGAACAGGTA AAATTCTATAATTTTGTGTCCCTACCTTGAGCTTAAATCTTACTCAACTCAGTGGAACAG TATGAACTGGATTTAAGAATATTACAATAGAATTTTTACAAAATGGGTTCAGTGTTTTTG TTTCAGTTTTTATCATCCTATATGGGCCTTCGCTGGACTGCTTTTTGGTTTTGTAAAAGT GAAGACTTGTAGTATAAGAATTTTTTGCATTTCTTTATACCAGTGAGAGTTTTAATATTT ACTTCTTTTAGGTTCCCCTCACAACCTCTGGCTCCGTGCCTAGCTACTAACTCTTTTCTA ATCGTCCTTACAAGAAAGTGATTTGTAGCCTGTAAATATTAAGACGACTGCTCTTCTTCT GAAAGTGTGTTTATACACCTGTACATACAAACACCCTACCAATCTGATTTTTCTTCAGGA TTATGAGTAGGTTCTGAATTTTCTTTCTTATAAGTTTTCAAGCATAATGGTACCCACATT TTAGACTTTGACTTTAAGCATTTCTCAGTGAAATTTAGTTCACAAAGAATCTTAAATTAT GTCTTTGAGTCTTTAGATACATTTCCTGAATATTTTAATTTAAAATTGTTAGAATTGGAT CACCTAATATTCTTTTCAAGACTCCTGGTGTATTAGAACTTCATATTGTTGTCACTCCTT GAAAAAAATAAAACTCTCAGGAATTAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-144, - strand, RNAz p=0.99798 | |
| 51-144, - strand, RNAz p=0.885902 | |
| 145-303, - strand, RNAz p=0.988096 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-144, - strand, RNAz p=0.99798 | |
| 51-144, - strand, RNAz p=0.885902 | |
| 145-303, - strand, RNAz p=0.988096 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 1-144, AM031032 KN-252-spleen, Bos sp. Bos sp. cDNA clone C0007405m14 5', (emb|AM031032.1|), blast E-value=0, identity=95.83% | |
| 1-144, 4061775 BARC 8BOV Bos taurus cDNA clone 8BOV_12K23 5', mRNA (gb|CK836808.1|), blast E-value=0, identity=95.83% | |
| 1-144, 4097956 BARC 10BOV Bos taurus cDNA clone 10BOV3_K03 5', mRNA (gb|CK957501.1|), blast E-value=0, identity=95.83% | |
| 1-144, 000928BEMN030252HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY127092.1|), blast E-value=0, identity=95.83% | |
| 11-144, 000803BCNA006359HT BCNA Bos taurus cDNA, mRNA sequence (gb|DY174834.1|), blast E-value=0, identity=95.52% | |
| 11-144, 000715BCNA003206HT BCNA Bos taurus cDNA, mRNA sequence (gb|DY178368.1|), blast E-value=0, identity=95.52% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 1-144, AM031032 KN-252-spleen, Bos sp. Bos sp. cDNA clone C0007405m14 5', (emb|AM031032.1|), blast E-value=0, identity=95.83% | |
| 1-144, 4061775 BARC 8BOV Bos taurus cDNA clone 8BOV_12K23 5', mRNA (gb|CK836808.1|), blast E-value=0, identity=95.83% | |
| 1-144, 4097956 BARC 10BOV Bos taurus cDNA clone 10BOV3_K03 5', mRNA (gb|CK957501.1|), blast E-value=0, identity=95.83% | |
| 1-144, 000928BEMN030252HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY127092.1|), blast E-value=0, identity=95.83% | |
| 11-144, 000803BCNA006359HT BCNA Bos taurus cDNA, mRNA sequence (gb|DY174834.1|), blast E-value=0, identity=95.52% | |
| 11-144, 000715BCNA003206HT BCNA Bos taurus cDNA, mRNA sequence (gb|DY178368.1|), blast E-value=0, identity=95.52% |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr7 (32317848-32317706) | |
| 1-144, gnl|canFam2|chr11 (25905958-25906157) | |
| 1-144, gnl|danRer3|chr9 (901603-901837) | |
| 1-144, gnl|dasNov1|scaffold_57481 (4048-3849) | |
| 1-144, gnl|echTel1|scaffold_308563 (46804-46605) | |
| 1-144, gnl|fr1|chrUn (138829034-138828795) | |
| 1-144, gnl|galGal2|chr13 (14625276-14625080) | |
| 1-144, gnl|hg17|chr5 (134180018-134180217) | |
| 1-144, gnl|Hg17|chr5 (134180053-134180195) | |
| 1-144, gnl|loxAfr1|scaffold_39068 (20265-20464) | |
| 1-144, gnl|mm7|chr13 (54761851-54762050) | |
| 1-144, gnl|Mm7|chr13 (54761886-54762028) | |
| 1-144, gnl|monDom2|scaffold_6 (98532649-98532848) | |
| 1-144, gnl|oryCun1|scaffold_204750 (20203-20402) | |
| 1-144, gnl|panTro1|chr4 (140533305-140533504) | |
| 1-144, gnl|rheMac2|chr6 (131250765-131250964) | |
| 1-144, gnl|rn3|chr17 (14990437-14990238) | |
| 1-144, gnl|tetNig1|chr7 (7871335-7871101) | |
| 1-144, gnl|xenTro1|scaffold_336 (404569-404333) | |
| 145-363, gnl|bosTau2|chr7 (32315440-32315222) | |
| 145-363, gnl|canFam2|chr11 (25908100-25908350) | |
| 145-363, gnl|danRer3|chr9 (901948-902176) | |
| 145-363, gnl|dasNov1|scaffold_9397 (12375-12125) | |
| 145-363, gnl|echTel1|scaffold_183522 (3962-3713) | |
| 145-363, gnl|fr1|chrUn (138828747-138828505) | |
| 145-363, gnl|galGal2|chr13 (14624547-14624303) | |
| 145-363, gnl|hg17|chr5 (134181057-134181305) | |
| 145-363, gnl|Hg17|chr5 (134181085-134181303) | |
| 145-363, gnl|loxAfr1|scaffold_18553 (15214-15464) | |
| 145-363, gnl|mm7|chr13 (54763777-54764027) | |
| 145-363, gnl|Mm7|chr13 (54763807-54764025) | |
| 145-363, gnl|monDom2|scaffold_6 (98533665-98533915) | |
| 145-363, gnl|oryCun1|scaffold_210002 (132-381) | |
| 145-363, gnl|panTro1|chr4 (140534345-140534593) | |
| 145-363, gnl|rheMac2|chr6 (131251815-131252063) | |
| 145-363, gnl|rn3|chr17 (14988779-14988529) | |
| 145-363, gnl|tetNig1|chr7 (7871032-7870808) | |
| 145-363, gnl|xenTro1|scaffold_336 (403268-403017) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr7 (32317848-32317706) | |
| 1-144, gnl|canFam2|chr11 (25905958-25906157) | |
| 1-144, gnl|danRer3|chr9 (901603-901837) | |
| 1-144, gnl|dasNov1|scaffold_57481 (4048-3849) | |
| 1-144, gnl|echTel1|scaffold_308563 (46804-46605) | |
| 1-144, gnl|fr1|chrUn (138829034-138828795) | |
| 1-144, gnl|galGal2|chr13 (14625276-14625080) | |
| 1-144, gnl|hg17|chr5 (134180018-134180217) | |
| 1-144, gnl|Hg17|chr5 (134180053-134180195) | |
| 1-144, gnl|loxAfr1|scaffold_39068 (20265-20464) | |
| 1-144, gnl|mm7|chr13 (54761851-54762050) | |
| 1-144, gnl|Mm7|chr13 (54761886-54762028) | |
| 1-144, gnl|monDom2|scaffold_6 (98532649-98532848) | |
| 1-144, gnl|oryCun1|scaffold_204750 (20203-20402) | |
| 1-144, gnl|panTro1|chr4 (140533305-140533504) | |
| 1-144, gnl|rheMac2|chr6 (131250765-131250964) | |
| 1-144, gnl|rn3|chr17 (14990437-14990238) | |
| 1-144, gnl|tetNig1|chr7 (7871335-7871101) | |
| 1-144, gnl|xenTro1|scaffold_336 (404569-404333) | |
| 145-363, gnl|bosTau2|chr7 (32315440-32315222) | |
| 145-363, gnl|canFam2|chr11 (25908100-25908350) | |
| 145-363, gnl|danRer3|chr9 (901948-902176) | |
| 145-363, gnl|dasNov1|scaffold_9397 (12375-12125) | |
| 145-363, gnl|echTel1|scaffold_183522 (3962-3713) | |
| 145-363, gnl|fr1|chrUn (138828747-138828505) | |
| 145-363, gnl|galGal2|chr13 (14624547-14624303) | |
| 145-363, gnl|hg17|chr5 (134181057-134181305) | |
| 145-363, gnl|Hg17|chr5 (134181085-134181303) | |
| 145-363, gnl|loxAfr1|scaffold_18553 (15214-15464) | |
| 145-363, gnl|mm7|chr13 (54763777-54764027) | |
| 145-363, gnl|Mm7|chr13 (54763807-54764025) | |
| 145-363, gnl|monDom2|scaffold_6 (98533665-98533915) | |
| 145-363, gnl|oryCun1|scaffold_210002 (132-381) | |
| 145-363, gnl|panTro1|chr4 (140534345-140534593) | |
| 145-363, gnl|rheMac2|chr6 (131251815-131252063) | |
| 145-363, gnl|rn3|chr17 (14988779-14988529) | |
| 145-363, gnl|tetNig1|chr7 (7871032-7870808) | |
| 145-363, gnl|xenTro1|scaffold_336 (403268-403017) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| liv (0.585137) | |
| thg (0.507164) | |
| cbl (0.344392) | |
| lin (0.291206) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| thg (0.507164) | |
| cbl (0.344392) | |
| lin (0.291206) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) |