Non-Coding RNA Search

Ss1.1-Emb1-C0005194_F14.5

Sequence:


               
               TTTCAAGTGACCGCCTTCTTTTTTTTTTAAGTGTTTCATAAGACAAAAAAATGAATAATG
TTTTTTGAAGTTCTAGTGAGAGTGAAGTCTGATATTGCAGTAATAATATTTATAAAAAGC
CCATCACTACCAGGAATAGTGATACCTCCCACCCCTTAATTTCCATAACAGAAATCTGAG
CATGTGCTATTTGAGAGTTGGGGGGAGAATGGCTACTTTTCCAGGCTTTTACAAGCATAG
CACCCACTGGTTTCCTACATACTTCTTTCAGGATCTTCAACCATGAGGTAAAAGAGCCAA
GACAAGTTCAAAGAACCTTAGCAAAAATTTGCTTTGGGATTTTCTTTTCTGGAAAAAAAA
AATAATAATAAAGGAAAAATACACTGAAAGCAAGTGAATTCCCAACTCGTACGATTCATC
ACGTAGAGTTCAAAGATCATTTCCATCATTTTCGTCATCCAACTATGAACCTGGGAAGCC
AGATCATGATTAAAACCGACACCAAGATTCGAGTTGCAGATCCACGCACCCAGTGTTCAG
ATGTGGCAAACTTCTCAGTGACAGCTGTGCTGGGCTCTGTCGCGTTGCGTCTCCTGCAGA
CTCTAAGATCTACGGAGTAGTCAACAATCACCTCGTTTTATTTCCTATGTTAGTTATTTA
TTTCAGAATTAACATTTTCGTTTATTTTTGTCTGATAAGTGTGTGTTTGGCACTGCTAAC
TACTATGAGGGTTTAAACAATGCTTCTTCCAGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAGTGACCGCCTTCTTTTTTTTTTAAGTGTTTCATAAGACAAAAAAATGAATAATG
TTTTTTGAAGTTCTAGTGAGAGTGAAGTCTGATATTGCAGTAATAATATTTATAAAAAGC
CCATCACTACCAGGAATAGTGATACCTCCCACCCCTTAATTTCCATAACAGAAATCTGAG
CATGTGCTATTTGAGAGTTGGGGGGAGAATGGCTACTTTTCCAGGCTTTTACAAGCATAG
CACCCACTGGTTTCCTACATACTTCTTTCAGGATCTTCAACCATGAGGTAAAAGAGCCAA
GACAAGTTCAAAGAACCTTAGCAAAAATTTGCTTTGGGATTTTCTTTTCTGGAAAAAAAA
AATAATAATAAAGGAAAAATACACTGAAAGCAAGTGAATTCCCAACTCGTACGATTCATC
ACGTAGAGTTCAAAGATCATTTCCATCATTTTCGTCATCCAACTATGAACCTGGGAAGCC
AGATCATGATTAAAACCGACACCAAGATTCGAGTTGCAGATCCACGCACCCAGTGTTCAG
ATGTGGCAAACTTCTCAGTGACAGCTGTGCTGGGCTCTGTCGCGTTGCGTCTCCTGCAGA
CTCTAAGATCTACGGAGTAGTCAACAATCACCTCGTTTTATTTCCTATGTTAGTTATTTA
TTTCAGAATTAACATTTTCGTTTATTTTTGTCTGATAAGTGTGTGTTTGGCACTGCTAAC
TACTATGAGGGTTTAAACAATGCTTCTTCCAGGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               109-215, - strand, RNAz p=0.921851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-215, - strand, RNAz p=0.921851

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr20 (6415714-6416449)
               

               
               1-756, gnl|Hg17|chr5 (71538268-71539005)
               

               
               1-756, gnl|Mm7|chr13 (96494140-96493380)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr20 (6415714-6416449)
               

               
               1-756, gnl|Hg17|chr5 (71538268-71539005)
               

               
               1-756, gnl|Mm7|chr13 (96494140-96493380)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-756, gnl\|bosTau2\|chr20 (6415714-6416449)
	1-756, gnl\|Hg17\|chr5 (71538268-71539005)
	1-756, gnl\|Mm7\|chr13 (96494140-96493380)