Ss1.1-Emb1-C0005194_M05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCAGGGTGCCCCTCCTCAAAGAATCTAAATTCCTCAGATCCCCCCACAATGCGGTCTG GTGGAGAAGGGCAGTCCTCTGAGACTGCCCAATGAGGCGAGCCAGGTCCAGAGTGGACCA CACTGCCCTGGGCGCCACTCCTAAAGGCATTCATTGGCAGGGCTGCCCACCAGGGGCACT GCTACCAGCCCGGCTCAAACCCTAGGGCCTGGGGGCAGCAATGGTCAGGCTCTGCAGCCG TCACACCATCTGGACTTCTGGCTCCTCAGCTATTCCCTGAAGCTTTTCCATGACTTCCCC CAAGCGGGGCTCGGGGGCTGGGGAGAGCTGGGGACCCGGGAGCCGACAGGCGGGTGAAGG CCATGCCGCCCCCTGGGAAAGTTCCCCGAAATGAGAACCTGGGACTGCAGTGTGAGTGGG GGTCCTGCTCCTTTGTGTGCTCGGCCATGGAGGAGTTCTGCGAGCACGTCACTCAGCACT TGCAGCAGCACCTGCAGGGCTCCGGGGAGGAGGAAGAGGAGGAGGAGGACCCGCTCGAGG AAGAATTCTCCTGCTTGTGGCAGGAGTGCGGCTTTTGCTCTCTGGACAATTCTGCCGCTC TCGTCCGCCATGTCTACTTCCACTGCTACCACACCAAGCTGAAGCAGTGGGGGCTGCAGG CGCTGCAGAGCCAGGCCGACCTCAGCCCGTGCATCCTGGACTTCCAGAGCCGCAACCTCA TCCCTGACATCCCTGACCACTTCCTGTGTCTGTGGGAGCACTGTGAGAGCTCCTTCGACA ACCCCGAGTGGTTCTATCGGCACGTGGAAGCTCACAGCCTGTGCTGTGAATACCAAACAG TCGGCAAGGACAACCATGTGGTGCCATGTGGCTGGAAAGGCTGCACCTGCACCTTCAAGG ACCGCTTTAAGCTTCGAGAGCACCTCCGCAGCCATACCCAGGAGAAGGTGGTGGCCTGCC CCACCTGCGGGGGCATGTTTGCCAACAACACCAAGTTCTTAGATCACATCCGTCGTCAGA CCTCATTGGATCAGCAACACTTCCAGTGCTCTCACTGTTCCAAGAGGTTTGCTACAGAGC GGCTGCTGCGGGACCACATGCGTAACCATGTGAACCACTATAAGTGCCCTCTGTGTGACA TGACCTGCCCGCTGCCATCCTCCCTCCGAAACCACATGCGCTTTCGCCACAGCGAGGACC GTCCCTTTAAATGTGACTGTTGTGACTACAGCTGCAAGAATCTGATCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCAGGGTGCCCCTCCTCAAAGAATCTAAATTCCTCAGATCCCCCCACAATGCGGTCTG GTGGAGAAGGGCAGTCCTCTGAGACTGCCCAATGAGGCGAGCCAGGTCCAGAGTGGACCA CACTGCCCTGGGCGCCACTCCTAAAGGCATTCATTGGCAGGGCTGCCCACCAGGGGCACT GCTACCAGCCCGGCTCAAACCCTAGGGCCTGGGGGCAGCAATGGTCAGGCTCTGCAGCCG TCACACCATCTGGACTTCTGGCTCCTCAGCTATTCCCTGAAGCTTTTCCATGACTTCCCC CAAGCGGGGCTCGGGGGCTGGGGAGAGCTGGGGACCCGGGAGCCGACAGGCGGGTGAAGG CCATGCCGCCCCCTGGGAAAGTTCCCCGAAATGAGAACCTGGGACTGCAGTGTGAGTGGG GGTCCTGCTCCTTTGTGTGCTCGGCCATGGAGGAGTTCTGCGAGCACGTCACTCAGCACT TGCAGCAGCACCTGCAGGGCTCCGGGGAGGAGGAAGAGGAGGAGGAGGACCCGCTCGAGG AAGAATTCTCCTGCTTGTGGCAGGAGTGCGGCTTTTGCTCTCTGGACAATTCTGCCGCTC TCGTCCGCCATGTCTACTTCCACTGCTACCACACCAAGCTGAAGCAGTGGGGGCTGCAGG CGCTGCAGAGCCAGGCCGACCTCAGCCCGTGCATCCTGGACTTCCAGAGCCGCAACCTCA TCCCTGACATCCCTGACCACTTCCTGTGTCTGTGGGAGCACTGTGAGAGCTCCTTCGACA ACCCCGAGTGGTTCTATCGGCACGTGGAAGCTCACAGCCTGTGCTGTGAATACCAAACAG TCGGCAAGGACAACCATGTGGTGCCATGTGGCTGGAAAGGCTGCACCTGCACCTTCAAGG ACCGCTTTAAGCTTCGAGAGCACCTCCGCAGCCATACCCAGGAGAAGGTGGTGGCCTGCC CCACCTGCGGGGGCATGTTTGCCAACAACACCAAGTTCTTAGATCACATCCGTCGTCAGA CCTCATTGGATCAGCAACACTTCCAGTGCTCTCACTGTTCCAAGAGGTTTGCTACAGAGC GGCTGCTGCGGGACCACATGCGTAACCATGTGAACCACTATAAGTGCCCTCTGTGTGACA TGACCTGCCCGCTGCCATCCTCCCTCCGAAACCACATGCGCTTTCGCCACAGCGAGGACC GTCCCTTTAAATGTGACTGTTGTGACTACAGCTGCAAGAATCTGATCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 81-199, - strand, RNAz p=0.936201 | |
| 616-735, - strand, RNAz p=0.771972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-199, - strand, RNAz p=0.936201 | |
| 616-735, - strand, RNAz p=0.771972 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_015517, - |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 2-329, gnl|bosTau2|chr15 (14318817-14318489) | |
| 2-329, gnl|Hg17|chr11 (118510653-118510330) | |
| 2-329, gnl|Mm7|chr9 (44230332-44230596) | |
| 352-535, gnl|bosTau2|chr15 (14313687-14313870) | |
| 352-535, gnl|Hg17|chr11 (118502854-118503043) | |
| 352-535, gnl|Mm7|chr9 (44236934-44236757) | |
| 537-767, gnl|bosTau2|chr15 (14315159-14315389) | |
| 537-767, gnl|canFam2|chr5 (17741675-17741482) | |
| 537-767, gnl|danRer3|chr5 (24959918-24959661) | |
| 537-767, gnl|fr1|chrUn (187804476-187804245) | |
| 537-767, gnl|galGal2|chr24 (4171320-4171088) | |
| 537-767, gnl|hg17|chr11 (118506634-118506891) | |
| 537-767, gnl|Hg17|chr11 (118506644-118506874) | |
| 537-767, gnl|loxAfr1|scaffold_32208 (25155-25416) | |
| 537-767, gnl|mm7|chr9 (44234149-44233893) | |
| 537-767, gnl|Mm7|chr9 (44234138-44233908) | |
| 537-767, gnl|monDom2|scaffold_2 (119460964-119460700) | |
| 537-767, gnl|oryCun1|scaffold_203908 (62913-63168) | |
| 537-767, gnl|panTro1|chr9 (120523055-120523312) | |
| 537-767, gnl|rheMac2|chr14 (117539557-117539814) | |
| 537-767, gnl|rn3|chr8 (47287583-47287327) | |
| 537-767, gnl|tetNig1|chr7 (4780063-4779841) | |
| 537-767, gnl|xenTro1|scaffold_75 (413424-413663) | |
| 878-1032, gnl|bosTau2|chr15 (14315936-14316090) | |
| 878-1032, gnl|Hg17|chr11 (118507748-118507902) | |
| 878-1032, gnl|Mm7|chr9 (44233372-44233218) | |
| 1110-1231, gnl|bosTau2|chr15 (14316773-14316894) | |
| 1110-1231, gnl|canFam2|chr5 (17740077-17739949) | |
| 1110-1231, gnl|danRer3|chr5 (24957027-24956899) | |
| 1110-1231, gnl|fr1|chrUn (187803406-187803279) | |
| 1110-1231, gnl|galGal2|chr24 (4169780-4169652) | |
| 1110-1231, gnl|hg17|chr11 (118508579-118508707) | |
| 1110-1231, gnl|Hg17|chr11 (118508580-118508701) | |
| 1110-1231, gnl|loxAfr1|scaffold_32208 (26771-26897) | |
| 1110-1231, gnl|mm7|chr9 (44232593-44232465) | |
| 1110-1231, gnl|Mm7|chr9 (44232590-44232469) | |
| 1110-1231, gnl|monDom2|scaffold_2 (119459431-119459303) | |
| 1110-1231, gnl|panTro1|chr9 (120525000-120525128) | |
| 1110-1231, gnl|rheMac2|chr14 (117541503-117541631) | |
| 1110-1231, gnl|rn3|chr8 (47286034-47285906) | |
| 1110-1231, gnl|tetNig1|chr7 (4778861-4778734) | |
| 1110-1231, gnl|xenTro1|scaffold_75 (417951-418079) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-329, gnl|bosTau2|chr15 (14318817-14318489) | |
| 2-329, gnl|Hg17|chr11 (118510653-118510330) | |
| 2-329, gnl|Mm7|chr9 (44230332-44230596) | |
| 352-535, gnl|bosTau2|chr15 (14313687-14313870) | |
| 352-535, gnl|Hg17|chr11 (118502854-118503043) | |
| 352-535, gnl|Mm7|chr9 (44236934-44236757) | |
| 537-767, gnl|bosTau2|chr15 (14315159-14315389) | |
| 537-767, gnl|canFam2|chr5 (17741675-17741482) | |
| 537-767, gnl|danRer3|chr5 (24959918-24959661) | |
| 537-767, gnl|fr1|chrUn (187804476-187804245) | |
| 537-767, gnl|galGal2|chr24 (4171320-4171088) | |
| 537-767, gnl|hg17|chr11 (118506634-118506891) | |
| 537-767, gnl|Hg17|chr11 (118506644-118506874) | |
| 537-767, gnl|loxAfr1|scaffold_32208 (25155-25416) | |
| 537-767, gnl|mm7|chr9 (44234149-44233893) | |
| 537-767, gnl|Mm7|chr9 (44234138-44233908) | |
| 537-767, gnl|monDom2|scaffold_2 (119460964-119460700) | |
| 537-767, gnl|oryCun1|scaffold_203908 (62913-63168) | |
| 537-767, gnl|panTro1|chr9 (120523055-120523312) | |
| 537-767, gnl|rheMac2|chr14 (117539557-117539814) | |
| 537-767, gnl|rn3|chr8 (47287583-47287327) | |
| 537-767, gnl|tetNig1|chr7 (4780063-4779841) | |
| 537-767, gnl|xenTro1|scaffold_75 (413424-413663) | |
| 878-1032, gnl|bosTau2|chr15 (14315936-14316090) | |
| 878-1032, gnl|Hg17|chr11 (118507748-118507902) | |
| 878-1032, gnl|Mm7|chr9 (44233372-44233218) | |
| 1110-1231, gnl|bosTau2|chr15 (14316773-14316894) | |
| 1110-1231, gnl|canFam2|chr5 (17740077-17739949) | |
| 1110-1231, gnl|danRer3|chr5 (24957027-24956899) | |
| 1110-1231, gnl|fr1|chrUn (187803406-187803279) | |
| 1110-1231, gnl|galGal2|chr24 (4169780-4169652) | |
| 1110-1231, gnl|hg17|chr11 (118508579-118508707) | |
| 1110-1231, gnl|Hg17|chr11 (118508580-118508701) | |
| 1110-1231, gnl|loxAfr1|scaffold_32208 (26771-26897) | |
| 1110-1231, gnl|mm7|chr9 (44232593-44232465) | |
| 1110-1231, gnl|Mm7|chr9 (44232590-44232469) | |
| 1110-1231, gnl|monDom2|scaffold_2 (119459431-119459303) | |
| 1110-1231, gnl|panTro1|chr9 (120525000-120525128) | |
| 1110-1231, gnl|rheMac2|chr14 (117541503-117541631) | |
| 1110-1231, gnl|rn3|chr8 (47286034-47285906) | |
| 1110-1231, gnl|tetNig1|chr7 (4778861-4778734) | |
| 1110-1231, gnl|xenTro1|scaffold_75 (417951-418079) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |