Non-Coding RNA Search

Ss1.1-Emb1-C0005195_B16.5

Sequence:


               
               TATTCTCCAGCGATTCCCTTGCATAGGACTATGCTTGTTTGGTTTAAATTGTTTGTCTCC
ATGAACCAAATGGCCAGTTTTTTTCTTGGTTGCCATCCCTTTAAAAAGAGTGAAACACAG
AAGCACTTCCAAGGGAATGGCTTTTCTTGAAAATTAAAAATTATTCCTCAGAAACGATAT
TTTGAAGCAAGATTAACAAAGCAGATCATACTTTTGTGTTTATTATTAGTGTTTGAACAT
GTCCACATTGGGACAAATCATTTTTGTTAGCAACTTTTCAGTATGACTGACAACCCAAAG
CAGATTATTTACTGATTGTTTGCAGTTGGAAATGAAGAAGCATTAATATTGGACTGAGTG
GCAGTGCATAAAACTTCAGGACAGATTCTGAAGGGACGCGCCCAACAGGTAGCATTTTAA
AATGGCTATTTTCACGACAGCAGAATCATTGATTTAAACTTTTCAGTTTGTAAGTTTGGA
TCAAATTTTGTTGGATCATTGGATAATGGAGTTCTTGTGTTAAAAATTATATACCATATA
ATTTTTGTTACTTGGTTACTACAAGTGTTATGACATTTTCATTGATTGAAAGAAAACTTC
AGGGCTTCTTTTCTGTATATAACAAGGAATTTAAACCTGTACATATTTTTGTACCTTTCA
GTTATGTAAATTTTGCACAGAAATTTTTTTGACATAAAAAGTTTATTTTCTTTCAATTTA
GTTCTGTGCATGCACTAATAAAACTTGCTGTTTAATTTAAAAGGAATATATAAGACTTTA
CCCATGTTATTTTTTTGGTTTTTATTTCAGATGTACAATTTTTTTTTTTTTTGGGTAAAT
TCAGTTTTCAGGGATTGAACACTATTGTTAGCAAGTGCCTAAAAGATGTGAAACAGTTTA
CATATGTTGACTGTAACATTAGGTCCCAGATGGGCCCTCTCCCCCTATAGTTTTATTTTA
AAGAAAGCCATACATAGATGCTTCAAGCTATCTTGCTATGCACATTATACATGTACTGTT
TTTGTGCAGTTTGTCTACTTTCTTAGAAGTGAAGTATTTTTTGTATAAAATCTGTTACAA
TTGTGTTTCTTAAATTGAGCCTAAGAATGGAGTTGATTGGAAATATACAGTATATATTAA
TAATGTATATGGTGTTTAAAGACTGGTAAGCATTGTTAATTTCTGTAATGAACGTTTTCT
TCAATTAAATTTCTCTTAAGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCTCCAGCGATTCCCTTGCATAGGACTATGCTTGTTTGGTTTAAATTGTTTGTCTCC
ATGAACCAAATGGCCAGTTTTTTTCTTGGTTGCCATCCCTTTAAAAAGAGTGAAACACAG
AAGCACTTCCAAGGGAATGGCTTTTCTTGAAAATTAAAAATTATTCCTCAGAAACGATAT
TTTGAAGCAAGATTAACAAAGCAGATCATACTTTTGTGTTTATTATTAGTGTTTGAACAT
GTCCACATTGGGACAAATCATTTTTGTTAGCAACTTTTCAGTATGACTGACAACCCAAAG
CAGATTATTTACTGATTGTTTGCAGTTGGAAATGAAGAAGCATTAATATTGGACTGAGTG
GCAGTGCATAAAACTTCAGGACAGATTCTGAAGGGACGCGCCCAACAGGTAGCATTTTAA
AATGGCTATTTTCACGACAGCAGAATCATTGATTTAAACTTTTCAGTTTGTAAGTTTGGA
TCAAATTTTGTTGGATCATTGGATAATGGAGTTCTTGTGTTAAAAATTATATACCATATA
ATTTTTGTTACTTGGTTACTACAAGTGTTATGACATTTTCATTGATTGAAAGAAAACTTC
AGGGCTTCTTTTCTGTATATAACAAGGAATTTAAACCTGTACATATTTTTGTACCTTTCA
GTTATGTAAATTTTGCACAGAAATTTTTTTGACATAAAAAGTTTATTTTCTTTCAATTTA
GTTCTGTGCATGCACTAATAAAACTTGCTGTTTAATTTAAAAGGAATATATAAGACTTTA
CCCATGTTATTTTTTTGGTTTTTATTTCAGATGTACAATTTTTTTTTTTTTTGGGTAAAT
TCAGTTTTCAGGGATTGAACACTATTGTTAGCAAGTGCCTAAAAGATGTGAAACAGTTTA
CATATGTTGACTGTAACATTAGGTCCCAGATGGGCCCTCTCCCCCTATAGTTTTATTTTA
AAGAAAGCCATACATAGATGCTTCAAGCTATCTTGCTATGCACATTATACATGTACTGTT
TTTGTGCAGTTTGTCTACTTTCTTAGAAGTGAAGTATTTTTTGTATAAAATCTGTTACAA
TTGTGTTTCTTAAATTGAGCCTAAGAATGGAGTTGATTGGAAATATACAGTATATATTAA
TAATGTATATGGTGTTTAAAGACTGGTAAGCATTGTTAATTTCTGTAATGAACGTTTTCT
TCAATTAAATTTCTCTTAAGTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               936-1133, - strand, RNAz p=0.652151

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               936-1133, - strand, RNAz p=0.652151

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-1223, gnl|bosTau2|chr26 (7568882-7570060)
               

               
               38-1223, gnl|Hg17|chr10 (97911316-97912473)
               

               
               38-1223, gnl|Mm7|chr19 (40810616-40811774)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1223, gnl|bosTau2|chr26 (7568882-7570060)
               

               
               38-1223, gnl|Hg17|chr10 (97911316-97912473)
               

               
               38-1223, gnl|Mm7|chr19 (40810616-40811774)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sag (0.182715)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	38-1223, gnl\|bosTau2\|chr26 (7568882-7570060)
	38-1223, gnl\|Hg17\|chr10 (97911316-97912473)
	38-1223, gnl\|Mm7\|chr19 (40810616-40811774)

	sag (0.182715)
	fty (0.17584)
	lun (0.150489)
	ski (0.146735)
	kid (0.129735)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)