Ss1.1-Emb1-C0005195_J13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGATAACATATATAAAGGACGGAGCACATTTATGGAAGAACTCACTGACACAGCAGAA ATCATAAGAAAAGCAACATCACAGTCTTTGGTTATCTTGGATGAATTGGGCAGAGGGACC AGCACCCATGATGGAATTGCCATTGCTTATGCTACCCTTGAGCATTTCATTAGAGATGTG AAATCCCTAACCCTGTTTGTTACCCATTATCCACCAGTTTGTGAGTTAGAAAAAAGTTAC TCACAACAGGTGGGGAATTACCACATGGGATTCTTGGTCAATGAGGATGAAAGCAAACAG GATCCAGGTGAAGAAGACAAAGTCCCTGATTTTGTCACTTTTCTTTATCAAATAACCAGA GGAAGTGCTGCAAGGAGTTACGGACTAAATGTGGCTAAACTAGCAGATGTTCCTGGAGAA ATTTTAAAGAAAGCAGCTAGCAAGTCAAAAGAGCTGGAAGGATTAGTAAATAGGAAAAGG AAAAGGCTAAAGTCTTTTGCCAAGTTATGGACGATTAATGATGCTAAAGACTTGCAAAAG TGGACAGATGACTTTGAAATGGAAGAAATTACAGACTTCTCTTCCTGATGGTAATGAAGA CTACATTTTTGAACAAAAAAGAGAGAATTAAAACTATCAACTGTACAAAACAACTCTGCA GTAACAGCCCATCTTTGTATGACGTGAGCAGAAAACATGACCGTGGTATAGTCTTATTAG AAATAGGGAGGCCTTTTGTGTAGAAAGTCTGATTCAGGTTCCAACCGTCCTGACTTTTAA AATCATAAACACTTTCGGATATTAAGATTTCTGTCATGTCACTAGCAAATGTCATGGATG ATGAGATTCACATAAAAGCCTGAAGTGATAGAATTTACAGTTCAAGAACTTTTACAGAGC GATAGAACAATTTAATGCATGGTTTTATTTGTCTCAGTTCCGATAGTTTGGAACTGGGTG AAATGTCTGGCCAGACTATGTCTTCATTCAAACTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGATAACATATATAAAGGACGGAGCACATTTATGGAAGAACTCACTGACACAGCAGAA ATCATAAGAAAAGCAACATCACAGTCTTTGGTTATCTTGGATGAATTGGGCAGAGGGACC AGCACCCATGATGGAATTGCCATTGCTTATGCTACCCTTGAGCATTTCATTAGAGATGTG AAATCCCTAACCCTGTTTGTTACCCATTATCCACCAGTTTGTGAGTTAGAAAAAAGTTAC TCACAACAGGTGGGGAATTACCACATGGGATTCTTGGTCAATGAGGATGAAAGCAAACAG GATCCAGGTGAAGAAGACAAAGTCCCTGATTTTGTCACTTTTCTTTATCAAATAACCAGA GGAAGTGCTGCAAGGAGTTACGGACTAAATGTGGCTAAACTAGCAGATGTTCCTGGAGAA ATTTTAAAGAAAGCAGCTAGCAAGTCAAAAGAGCTGGAAGGATTAGTAAATAGGAAAAGG AAAAGGCTAAAGTCTTTTGCCAAGTTATGGACGATTAATGATGCTAAAGACTTGCAAAAG TGGACAGATGACTTTGAAATGGAAGAAATTACAGACTTCTCTTCCTGATGGTAATGAAGA CTACATTTTTGAACAAAAAAGAGAGAATTAAAACTATCAACTGTACAAAACAACTCTGCA GTAACAGCCCATCTTTGTATGACGTGAGCAGAAAACATGACCGTGGTATAGTCTTATTAG AAATAGGGAGGCCTTTTGTGTAGAAAGTCTGATTCAGGTTCCAACCGTCCTGACTTTTAA AATCATAAACACTTTCGGATATTAAGATTTCTGTCATGTCACTAGCAAATGTCATGGATG ATGAGATTCACATAAAAGCCTGAAGTGATAGAATTTACAGTTCAAGAACTTTTACAGAGC GATAGAACAATTTAATGCATGGTTTTATTTGTCTCAGTTCCGATAGTTTGGAACTGGGTG AAATGTCTGGCCAGACTATGTCTTCATTCAAACTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-179, gnl|bosTau2|chr7 (51667550-51667372) | |
| 1-179, gnl|canFam2|chr3 (29233829-29233638) | |
| 1-179, gnl|danRer3|chrUn (142298976-142298787) | |
| 1-179, gnl|dasNov1|scaffold_10732 (45599-45408) | |
| 1-179, gnl|echTel1|scaffold_317452 (7486-7687) | |
| 1-179, gnl|fr1|chrUn (188975140-188975336) | |
| 1-179, gnl|galGal2|chrZ (28660869-28661071) | |
| 1-179, gnl|hg17|chr5 (80185709-80185911) | |
| 1-179, gnl|Hg17|chr5 (80185715-80185893) | |
| 1-179, gnl|loxAfr1|scaffold_85480 (8636-8827) | |
| 1-179, gnl|mm7|chr13 (89328507-89328306) | |
| 1-179, gnl|Mm7|chr13 (89328499-89328321) | |
| 1-179, gnl|monDom2|scaffold_20 (23364521-23364330) | |
| 1-179, gnl|oryCun1|scaffold_110799 (1728-1930) | |
| 1-179, gnl|panTro1|chr4 (35003419-35003217) | |
| 1-179, gnl|rheMac2|chr6 (77038163-77038365) | |
| 1-179, gnl|rn3|chr2 (22394619-22394418) | |
| 1-179, gnl|tetNig1|chr12 (3428820-3428631) | |
| 1-179, gnl|xenTro1|scaffold_1231 (77208-77413) | |
| 478-994, gnl|bosTau2|chr7 (51651963-51651460) | |
| 478-994, gnl|Hg17|chr5 (80207324-80207826) | |
| 478-994, gnl|Mm7|chr13 (89317761-89317304) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-179, gnl|bosTau2|chr7 (51667550-51667372) | |
| 1-179, gnl|canFam2|chr3 (29233829-29233638) | |
| 1-179, gnl|danRer3|chrUn (142298976-142298787) | |
| 1-179, gnl|dasNov1|scaffold_10732 (45599-45408) | |
| 1-179, gnl|echTel1|scaffold_317452 (7486-7687) | |
| 1-179, gnl|fr1|chrUn (188975140-188975336) | |
| 1-179, gnl|galGal2|chrZ (28660869-28661071) | |
| 1-179, gnl|hg17|chr5 (80185709-80185911) | |
| 1-179, gnl|Hg17|chr5 (80185715-80185893) | |
| 1-179, gnl|loxAfr1|scaffold_85480 (8636-8827) | |
| 1-179, gnl|mm7|chr13 (89328507-89328306) | |
| 1-179, gnl|Mm7|chr13 (89328499-89328321) | |
| 1-179, gnl|monDom2|scaffold_20 (23364521-23364330) | |
| 1-179, gnl|oryCun1|scaffold_110799 (1728-1930) | |
| 1-179, gnl|panTro1|chr4 (35003419-35003217) | |
| 1-179, gnl|rheMac2|chr6 (77038163-77038365) | |
| 1-179, gnl|rn3|chr2 (22394619-22394418) | |
| 1-179, gnl|tetNig1|chr12 (3428820-3428631) | |
| 1-179, gnl|xenTro1|scaffold_1231 (77208-77413) | |
| 478-994, gnl|bosTau2|chr7 (51651963-51651460) | |
| 478-994, gnl|Hg17|chr5 (80207324-80207826) | |
| 478-994, gnl|Mm7|chr13 (89317761-89317304) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| amn (0.417711) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ste (0.135208) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ste (0.135208) |