Non-Coding RNA Search

Ss1.1-Emb1-C0005195_J19.5

Sequence:


               
               GAAAATCCTTCCATGAATTCTGCTTCCCAAATAACTGTGAAAGGACTCAGTAACTTGGGA
AATACATGTTTCTTCAATGCAGTTATGCAGAATTTGTCACAGACCCCAGTGCTTAGAGAA
TTACTAAAAGAAGTAAAAATGTCTGGAACAATTGTAAAAATTGAACCACCTGATTTGGCC
CTAACAGAACCCTTAGAAATAAACCTTGAGCCTCCAGGCCCTCTTACTTTAGCCATGAGC
CAGTTTCTTAATGAGATGCAAGAGACCAAAAAGGGAATCGTGACACCTAGAGAACTCTTT
TCTCAGGTCTGTAAAAAAGCAGTGCGTTTTAAAGGCTATCAGCAGCAAGACAGCCAGGAG
CTGCTTCGATATTTATTGGATGGAATGAGAGCAGAAGAACATCAAAGAGTGAGTAAAGGA
ATTCTTAAAGCATTTGGTAATTCTACTGAAAAACTGGATGAAGAACTAAAAAATAAAGTT
AAAGATTATGAAAAGAAAAAATCTGTACCAAGTTTTGTGGACCGAATATTTGGTGGTGAA
CTAACTAGTACAATCATGTGTGACGAATGCAGAACTGTATCCTTGGTTCATGAATCTTTC
CTTGATTTGTCTCTACCAGTTTTAGATGATCAGAGTGGTAAGAAAAGTATAAATGATAAA
AATCTGAAAAAGACAATGGAGGATGAAGATAAAGACAGTGAGGAAGAAAAAGATAATGAC
AGTTACATAAAGGAGAGAAATGATATTCCTTCAGGAACAAGTAAGCACTTACAGAAAAAA
GCAAAGAAGCAAGCCAAAAAGCAAGCCAAGTACCAACGAAGGCAACAAAAAATTCAAGGA
AAAGTTCTTCATTTAAATGATGTCTGTGCCGTTGACCATCCTGAAGATAATGAATGTGAA
GTTGAAGCGTCCACTTCAGAAGTGGATGTTAAATCCAGCCATACCTCACAAGAGGAAGTT
ATGCATAAGGAATGTTGTGAGAAAGATTTGAATGGCCATGAAAAAACAGTAGAAAGTGTG
ACTGACAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATCCTTCCATGAATTCTGCTTCCCAAATAACTGTGAAAGGACTCAGTAACTTGGGA
AATACATGTTTCTTCAATGCAGTTATGCAGAATTTGTCACAGACCCCAGTGCTTAGAGAA
TTACTAAAAGAAGTAAAAATGTCTGGAACAATTGTAAAAATTGAACCACCTGATTTGGCC
CTAACAGAACCCTTAGAAATAAACCTTGAGCCTCCAGGCCCTCTTACTTTAGCCATGAGC
CAGTTTCTTAATGAGATGCAAGAGACCAAAAAGGGAATCGTGACACCTAGAGAACTCTTT
TCTCAGGTCTGTAAAAAAGCAGTGCGTTTTAAAGGCTATCAGCAGCAAGACAGCCAGGAG
CTGCTTCGATATTTATTGGATGGAATGAGAGCAGAAGAACATCAAAGAGTGAGTAAAGGA
ATTCTTAAAGCATTTGGTAATTCTACTGAAAAACTGGATGAAGAACTAAAAAATAAAGTT
AAAGATTATGAAAAGAAAAAATCTGTACCAAGTTTTGTGGACCGAATATTTGGTGGTGAA
CTAACTAGTACAATCATGTGTGACGAATGCAGAACTGTATCCTTGGTTCATGAATCTTTC
CTTGATTTGTCTCTACCAGTTTTAGATGATCAGAGTGGTAAGAAAAGTATAAATGATAAA
AATCTGAAAAAGACAATGGAGGATGAAGATAAAGACAGTGAGGAAGAAAAAGATAATGAC
AGTTACATAAAGGAGAGAAATGATATTCCTTCAGGAACAAGTAAGCACTTACAGAAAAAA
GCAAAGAAGCAAGCCAAAAAGCAAGCCAAGTACCAACGAAGGCAACAAAAAATTCAAGGA
AAAGTTCTTCATTTAAATGATGTCTGTGCCGTTGACCATCCTGAAGATAATGAATGTGAA
GTTGAAGCGTCCACTTCAGAAGTGGATGTTAAATCCAGCCATACCTCACAAGAGGAAGTT
ATGCATAAGGAATGTTGTGAGAAAGATTTGAATGGCCATGAAAAAACAGTAGAAAGTGTG
ACTGACAATCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11640586|gb|AAG39290.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11640586|gb|AAG39290.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-317, - strand, RNAz p=0.688357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-317, - strand, RNAz p=0.688357

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               187-317, gnl|bosTau2|chr1 (6513980-6513850)
               

               
               187-317, gnl|canFam2|chr31 (27063665-27063844)
               

               
               187-317, gnl|dasNov1|scaffold_29126 (8115-8293)
               

               
               187-317, gnl|echTel1|scaffold_322456 (91939-91761)
               

               
               187-317, gnl|fr1|chrUn (260859174-260859013)
               

               
               187-317, gnl|galGal2|chr1 (97752403-97752547)
               

               
               187-317, gnl|hg17|chr21 (29333199-29333378)
               

               
               187-317, gnl|Hg17|chr21 (29333218-29333348)
               

               
               187-317, gnl|loxAfr1|scaffold_44611 (13293-13115)
               

               
               187-317, gnl|mm7|chr16 (87513641-87513819)
               

               
               187-317, gnl|Mm7|chr16 (87513660-87513790)
               

               
               187-317, gnl|monDom2|scaffold_29 (5895268-5895097)
               

               
               187-317, gnl|oryCun1|scaffold_186795 (9075-8896)
               

               
               187-317, gnl|panTro1|chr22 (29351959-29352138)
               

               
               187-317, gnl|rheMac2|chr3 (17622939-17622760)
               

               
               187-317, gnl|rn3|chr11 (27220378-27220556)
               

               
               187-317, gnl|tetNig1|chr16 (6096190-6096330)
               

               
               187-317, gnl|xenTro1|scaffold_490 (466486-466651)
               


               
               632-810, gnl|bosTau2|chr1 (6509165-6508987)
               

               
               632-810, gnl|Hg17|chr21 (29337613-29337791)
               

               
               632-810, gnl|Mm7|chr16 (87518660-87518835)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-317, gnl|bosTau2|chr1 (6513980-6513850)
               

               
               187-317, gnl|canFam2|chr31 (27063665-27063844)
               

               
               187-317, gnl|dasNov1|scaffold_29126 (8115-8293)
               

               
               187-317, gnl|echTel1|scaffold_322456 (91939-91761)
               

               
               187-317, gnl|fr1|chrUn (260859174-260859013)
               

               
               187-317, gnl|galGal2|chr1 (97752403-97752547)
               

               
               187-317, gnl|hg17|chr21 (29333199-29333378)
               

               
               187-317, gnl|Hg17|chr21 (29333218-29333348)
               

               
               187-317, gnl|loxAfr1|scaffold_44611 (13293-13115)
               

               
               187-317, gnl|mm7|chr16 (87513641-87513819)
               

               
               187-317, gnl|Mm7|chr16 (87513660-87513790)
               

               
               187-317, gnl|monDom2|scaffold_29 (5895268-5895097)
               

               
               187-317, gnl|oryCun1|scaffold_186795 (9075-8896)
               

               
               187-317, gnl|panTro1|chr22 (29351959-29352138)
               

               
               187-317, gnl|rheMac2|chr3 (17622939-17622760)
               

               
               187-317, gnl|rn3|chr11 (27220378-27220556)
               

               
               187-317, gnl|tetNig1|chr16 (6096190-6096330)
               

               
               187-317, gnl|xenTro1|scaffold_490 (466486-466651)
               


               
               632-810, gnl|bosTau2|chr1 (6509165-6508987)
               

               
               632-810, gnl|Hg17|chr21 (29337613-29337791)
               

               
               632-810, gnl|Mm7|chr16 (87518660-87518835)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               mas (0.210305)
               

               
               tes (0.207814)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

	187-317, gnl\|bosTau2\|chr1 (6513980-6513850)
	187-317, gnl\|canFam2\|chr31 (27063665-27063844)
	187-317, gnl\|dasNov1\|scaffold_29126 (8115-8293)
	187-317, gnl\|echTel1\|scaffold_322456 (91939-91761)
	187-317, gnl\|fr1\|chrUn (260859174-260859013)
	187-317, gnl\|galGal2\|chr1 (97752403-97752547)
	187-317, gnl\|hg17\|chr21 (29333199-29333378)
	187-317, gnl\|Hg17\|chr21 (29333218-29333348)
	187-317, gnl\|loxAfr1\|scaffold_44611 (13293-13115)
	187-317, gnl\|mm7\|chr16 (87513641-87513819)
	187-317, gnl\|Mm7\|chr16 (87513660-87513790)
	187-317, gnl\|monDom2\|scaffold_29 (5895268-5895097)
	187-317, gnl\|oryCun1\|scaffold_186795 (9075-8896)
	187-317, gnl\|panTro1\|chr22 (29351959-29352138)
	187-317, gnl\|rheMac2\|chr3 (17622939-17622760)
	187-317, gnl\|rn3\|chr11 (27220378-27220556)
	187-317, gnl\|tetNig1\|chr16 (6096190-6096330)
	187-317, gnl\|xenTro1\|scaffold_490 (466486-466651)

	632-810, gnl\|bosTau2\|chr1 (6509165-6508987)
	632-810, gnl\|Hg17\|chr21 (29337613-29337791)
	632-810, gnl\|Mm7\|chr16 (87518660-87518835)

	mas (0.210305)
	tes (0.207814)
	spl (0.143184)
	pla (0.133672)
	ova (0.129132)