Ss1.1-Emb1-C0005195_K09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCGGTTCGTCCGCGATAGACGGAACTTCATTAGAGATGTCTAAGCAACAACCAACTC AATTTATAAATCCAGAAACTCCTGGCTATGTTGGATTTGCAAATCTTCCCAATCAAGTTC ATCGAAAATCGGTGAAAAAAGGTTTTGAATTCACACTGATGGTGGTCGGTGAATCGGGCC TGGGGAAGTCGACGCTCATAAACAGCCTGTTCCTGACCGACCTCTACCCGGAGAGAGTCA TACCTGGAGCCGCAGAGAAAATTGAAAGAACTGTCCAGATTGAGGCTTCAACTGTTGAGA TAGAAGAGCGAGGGGTCAAGTTGCGCCTGACAGTGGTGGACACGCCCGGCTACGGGGACG CCATCAACTGCAGGGATTGCTTCAAGACCATCATCTGCTACATCGATGAGCAGTTCGAGC GGTACCTGCACGACGAGAGTGGGCTGAACCGGCGGCACATCGTCGATAACAGGGTGCACT GCTGCTTCTACTTCATCTCCCCCTTCGGACACGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCGGTTCGTCCGCGATAGACGGAACTTCATTAGAGATGTCTAAGCAACAACCAACTC AATTTATAAATCCAGAAACTCCTGGCTATGTTGGATTTGCAAATCTTCCCAATCAAGTTC ATCGAAAATCGGTGAAAAAAGGTTTTGAATTCACACTGATGGTGGTCGGTGAATCGGGCC TGGGGAAGTCGACGCTCATAAACAGCCTGTTCCTGACCGACCTCTACCCGGAGAGAGTCA TACCTGGAGCCGCAGAGAAAATTGAAAGAACTGTCCAGATTGAGGCTTCAACTGTTGAGA TAGAAGAGCGAGGGGTCAAGTTGCGCCTGACAGTGGTGGACACGCCCGGCTACGGGGACG CCATCAACTGCAGGGATTGCTTCAAGACCATCATCTGCTACATCGATGAGCAGTTCGAGC GGTACCTGCACGACGAGAGTGGGCTGAACCGGCGGCACATCGTCGATAACAGGGTGCACT GCTGCTTCTACTTCATCTCCCCCTTCGGACACGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 51-170, - strand, RNAz p=0.739337 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-170, - strand, RNAz p=0.739337 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 46-170, gnl|bosTau2|chr3 (85331975-85332099) | |
| 46-170, gnl|Hg17|chr2 (241985396-241985520) | |
| 46-170, gnl|Mm7|chr1 (93398964-93399088) | |
| 253-379, gnl|bosTau2|chr3 (85341209-85341335) | |
| 253-379, gnl|canFam2|chr25 (54265866-54266028) | |
| 253-379, gnl|danRer3|chr2 (14136935-14136770) | |
| 253-379, gnl|dasNov1|scaffold_18138 (50506-50637) | |
| 253-379, gnl|echTel1|scaffold_319844 (48043-47898) | |
| 253-379, gnl|fr1|chrUn (187449383-187449543) | |
| 253-379, gnl|galGal2|chr9 (8632414-8632248) | |
| 253-379, gnl|hg17|chr2 (241995358-241995522) | |
| 253-379, gnl|Hg17|chr2 (241995377-241995503) | |
| 253-379, gnl|loxAfr1|scaffold_22615 (3627-3471) | |
| 253-379, gnl|mm7|chr1 (93405128-93405312) | |
| 253-379, gnl|Mm7|chr1 (93405147-93405273) | |
| 253-379, gnl|monDom2|scaffold_69 (8708196-8708349) | |
| 253-379, gnl|oryCun1|scaffold_195368 (1836-1998) | |
| 253-379, gnl|panTro1|chr13 (133469981-133470145) | |
| 253-379, gnl|rheMac2|chr12 (105255237-105255401) | |
| 253-379, gnl|rn3|chr9 (92981550-92981734) | |
| 253-379, gnl|tetNig1|chr15 (3012471-3012631) | |
| 253-379, gnl|xenTro1|scaffold_118 (488122-488283) | |
| 397-515, gnl|bosTau2|chr25 (24412036-24412154) | |
| 397-515, gnl|canFam2|chr6 (20729456-20729370) | |
| 397-515, gnl|danRer3|chr19 (66963006-66962920) | |
| 397-515, gnl|dasNov1|scaffold_30596 (14624-14710) | |
| 397-515, gnl|echTel1|scaffold_250891 (468-554) | |
| 397-515, gnl|fr1|chrUn (84881370-84881284) | |
| 397-515, gnl|galGal2|chr15 (752770-752684) | |
| 397-515, gnl|hg17|chr16 (30300160-30300246) | |
| 397-515, gnl|Hg17|chr16 (30300278-30300160) | |
| 397-515, gnl|loxAfr1|scaffold_36712 (33190-33276) | |
| 397-515, gnl|mm7|chr7 (123313458-123313544) | |
| 397-515, gnl|Mm7|chr7 (123313576-123313458) | |
| 397-515, gnl|monDom2|scaffold_56 (4490662-4490576) | |
| 397-515, gnl|oryCun1|scaffold_207737 (134212-134126) | |
| 397-515, gnl|panTro1|chr18 (31066918-31067004) | |
| 397-515, gnl|rheMac2|chr20 (28441699-28441785) | |
| 397-515, gnl|rn3|chr1 (186626822-186626908) | |
| 397-515, gnl|tetNig1|chr10 (10264459-10264545) | |
| 397-515, gnl|xenTro1|scaffold_118 (577239-577153) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-170, gnl|bosTau2|chr3 (85331975-85332099) | |
| 46-170, gnl|Hg17|chr2 (241985396-241985520) | |
| 46-170, gnl|Mm7|chr1 (93398964-93399088) | |
| 253-379, gnl|bosTau2|chr3 (85341209-85341335) | |
| 253-379, gnl|canFam2|chr25 (54265866-54266028) | |
| 253-379, gnl|danRer3|chr2 (14136935-14136770) | |
| 253-379, gnl|dasNov1|scaffold_18138 (50506-50637) | |
| 253-379, gnl|echTel1|scaffold_319844 (48043-47898) | |
| 253-379, gnl|fr1|chrUn (187449383-187449543) | |
| 253-379, gnl|galGal2|chr9 (8632414-8632248) | |
| 253-379, gnl|hg17|chr2 (241995358-241995522) | |
| 253-379, gnl|Hg17|chr2 (241995377-241995503) | |
| 253-379, gnl|loxAfr1|scaffold_22615 (3627-3471) | |
| 253-379, gnl|mm7|chr1 (93405128-93405312) | |
| 253-379, gnl|Mm7|chr1 (93405147-93405273) | |
| 253-379, gnl|monDom2|scaffold_69 (8708196-8708349) | |
| 253-379, gnl|oryCun1|scaffold_195368 (1836-1998) | |
| 253-379, gnl|panTro1|chr13 (133469981-133470145) | |
| 253-379, gnl|rheMac2|chr12 (105255237-105255401) | |
| 253-379, gnl|rn3|chr9 (92981550-92981734) | |
| 253-379, gnl|tetNig1|chr15 (3012471-3012631) | |
| 253-379, gnl|xenTro1|scaffold_118 (488122-488283) | |
| 397-515, gnl|bosTau2|chr25 (24412036-24412154) | |
| 397-515, gnl|canFam2|chr6 (20729456-20729370) | |
| 397-515, gnl|danRer3|chr19 (66963006-66962920) | |
| 397-515, gnl|dasNov1|scaffold_30596 (14624-14710) | |
| 397-515, gnl|echTel1|scaffold_250891 (468-554) | |
| 397-515, gnl|fr1|chrUn (84881370-84881284) | |
| 397-515, gnl|galGal2|chr15 (752770-752684) | |
| 397-515, gnl|hg17|chr16 (30300160-30300246) | |
| 397-515, gnl|Hg17|chr16 (30300278-30300160) | |
| 397-515, gnl|loxAfr1|scaffold_36712 (33190-33276) | |
| 397-515, gnl|mm7|chr7 (123313458-123313544) | |
| 397-515, gnl|Mm7|chr7 (123313576-123313458) | |
| 397-515, gnl|monDom2|scaffold_56 (4490662-4490576) | |
| 397-515, gnl|oryCun1|scaffold_207737 (134212-134126) | |
| 397-515, gnl|panTro1|chr18 (31066918-31067004) | |
| 397-515, gnl|rheMac2|chr20 (28441699-28441785) | |
| 397-515, gnl|rn3|chr1 (186626822-186626908) | |
| 397-515, gnl|tetNig1|chr10 (10264459-10264545) | |
| 397-515, gnl|xenTro1|scaffold_118 (577239-577153) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.267344) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) |