Non-Coding RNA Search

Ss1.1-Emb1-C0005195_L15.5

Sequence:


               
               CGCTTCAGACGGAGGCTGGCAGTCACTGGGACTTCTGTTCAGGGAGAAAAGGCATCATGG
AGAAAACGTAGTGCTTCCTGCCTCCAGGAACCTGGCAGACACAAAGCTTCTGCATCTCAG
ATGGAATCCGGGGCCTCTGAGTGACTCATCTGGCTTCCCACGGATTCTGATCCCGACAGG
CTGCAGAGTGTTGATAACCCAATAAAAGCAGAAGCTCAAACCGGCATTCGGTTTACTTAC
AAAGAAAACTTTTTTTCACCTTTATGTCTTCTTTGGGAAGATACCTGCTTTAAAAAACAA
ACAAACAAAGCAGAAAACTGCAGGTGATTTTAAGGAATGAAATAGGTGTACTGAGTCTGG
GTGCTACTTTGCTGGTGATGAGGTGGCTGACGCACTGTGGGAGGACTTTCTTTCTTCACT
CCTATAGGTTAAGGTCTGATGCTTTATCTTTCTAAGGCAATTCCCTGGAGTTTTCTGAGC
ACTGGTGGTAACTGCATCTTGGGATGGGAGGTTAGCCATTTAACAGGAAAAGGGACTTGG
GGCTCCTACTTCTTACAGATGCAGTAAAGATAGTCTGGGAAGTATCAGCGCGGGAAGGTG
TTGGTCCCTGTGGCTTAGGGAGCACTCAGCTTTGCCTGCCTCAGGAGCAACAATTTTCAG
GTCTCACACAAATGAGACAAGGGAAATAATGATCCCCTGTGAGTCTCTCTGGTGCACAGG
TGCTGGGAAAAAGGGAATAGCAGCAGTGTAACTGCAGAACACAGACCCAGGTCCACCAGG
CAGGGCCAGCATTGGTGGATGGTCAGGCATTGACCAATGACAGGGCTGATGGGCTTTAAA
ATACAGTCCTGCCTTTGTAGCCTGGAGTGTGAGAATGAGTATTAGATGAAATGCCTATTT
CATGGTTCAAGGGGAAGTCTTTGATCATTCCCTTATTTGGTTTGTCTTTCACTTTGGAAT
CTCATTCAGGGAGTTGCTGCTTCCTGCTCAGTGCTGCCCAAGCCCTACCAGCTCCCCTGT
CCTTTCTGGTTGGGGTTTGGTTGGGTCTCCCAGCCTCACTCACAATGGAGCCGGCGTGCA
GAGCCCATCACTGAGAAAGCCCATGCAGTATTCCCTGTGCTCTGTGCTCATGTTTTCTCT
GGAAGGGACAGGCGAAACTGTTTCTCATTTTCAGTCATTTTTTAGCAGAGTAAATGTAAC
TAACTTATATTTTCCCCTTTATGAAGGACAGAAGTTATTTTTACGTAGTTTCCAAATTTT
ATACAGAATTTTTGTAAAATCTTCTCTGCAAAGTTAACTGCAAGAATGTAAATATGCTTC
TAATAAAATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTCAGACGGAGGCTGGCAGTCACTGGGACTTCTGTTCAGGGAGAAAAGGCATCATGG
AGAAAACGTAGTGCTTCCTGCCTCCAGGAACCTGGCAGACACAAAGCTTCTGCATCTCAG
ATGGAATCCGGGGCCTCTGAGTGACTCATCTGGCTTCCCACGGATTCTGATCCCGACAGG
CTGCAGAGTGTTGATAACCCAATAAAAGCAGAAGCTCAAACCGGCATTCGGTTTACTTAC
AAAGAAAACTTTTTTTCACCTTTATGTCTTCTTTGGGAAGATACCTGCTTTAAAAAACAA
ACAAACAAAGCAGAAAACTGCAGGTGATTTTAAGGAATGAAATAGGTGTACTGAGTCTGG
GTGCTACTTTGCTGGTGATGAGGTGGCTGACGCACTGTGGGAGGACTTTCTTTCTTCACT
CCTATAGGTTAAGGTCTGATGCTTTATCTTTCTAAGGCAATTCCCTGGAGTTTTCTGAGC
ACTGGTGGTAACTGCATCTTGGGATGGGAGGTTAGCCATTTAACAGGAAAAGGGACTTGG
GGCTCCTACTTCTTACAGATGCAGTAAAGATAGTCTGGGAAGTATCAGCGCGGGAAGGTG
TTGGTCCCTGTGGCTTAGGGAGCACTCAGCTTTGCCTGCCTCAGGAGCAACAATTTTCAG
GTCTCACACAAATGAGACAAGGGAAATAATGATCCCCTGTGAGTCTCTCTGGTGCACAGG
TGCTGGGAAAAAGGGAATAGCAGCAGTGTAACTGCAGAACACAGACCCAGGTCCACCAGG
CAGGGCCAGCATTGGTGGATGGTCAGGCATTGACCAATGACAGGGCTGATGGGCTTTAAA
ATACAGTCCTGCCTTTGTAGCCTGGAGTGTGAGAATGAGTATTAGATGAAATGCCTATTT
CATGGTTCAAGGGGAAGTCTTTGATCATTCCCTTATTTGGTTTGTCTTTCACTTTGGAAT
CTCATTCAGGGAGTTGCTGCTTCCTGCTCAGTGCTGCCCAAGCCCTACCAGCTCCCCTGT
CCTTTCTGGTTGGGGTTTGGTTGGGTCTCCCAGCCTCACTCACAATGGAGCCGGCGTGCA
GAGCCCATCACTGAGAAAGCCCATGCAGTATTCCCTGTGCTCTGTGCTCATGTTTTCTCT
GGAAGGGACAGGCGAAACTGTTTCTCATTTTCAGTCATTTTTTAGCAGAGTAAATGTAAC
TAACTTATATTTTCCCCTTTATGAAGGACAGAAGTTATTTTTACGTAGTTTCCAAATTTT
ATACAGAATTTTTGTAAAATCTTCTCTGCAAAGTTAACTGCAAGAATGTAAATATGCTTC
TAATAAAATAAC

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               3-269, gnl|bosTau2|chr20 (2808490-2808223)
               

               
               3-269, gnl|Hg17|chr5 (171403446-171403170)
               


               
               291-837, gnl|bosTau2|chr20 (2808167-2807614)
               

               
               291-837, gnl|Hg17|chr5 (171403118-171402189)
               


               
               944-1332, gnl|bosTau2|chr20 (2807506-2807130)
               

               
               944-1332, gnl|Hg17|chr5 (171402078-171401695)
               

               
               944-1332, gnl|Mm7|chr11 (32576218-32576591)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-269, gnl|bosTau2|chr20 (2808490-2808223)
               

               
               3-269, gnl|Hg17|chr5 (171403446-171403170)
               


               
               291-837, gnl|bosTau2|chr20 (2808167-2807614)
               

               
               291-837, gnl|Hg17|chr5 (171403118-171402189)
               


               
               944-1332, gnl|bosTau2|chr20 (2807506-2807130)
               

               
               944-1332, gnl|Hg17|chr5 (171402078-171401695)
               

               
               944-1332, gnl|Mm7|chr11 (32576218-32576591)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               clu (0.119646)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               clu (0.119646)

	3-269, gnl\|bosTau2\|chr20 (2808490-2808223)
	3-269, gnl\|Hg17\|chr5 (171403446-171403170)

	291-837, gnl\|bosTau2\|chr20 (2808167-2807614)
	291-837, gnl\|Hg17\|chr5 (171403118-171402189)

	944-1332, gnl\|bosTau2\|chr20 (2807506-2807130)
	944-1332, gnl\|Hg17\|chr5 (171402078-171401695)
	944-1332, gnl\|Mm7\|chr11 (32576218-32576591)

	sin (0.349895)
	spl (0.286369)
	cbl (0.229595)
	sag (0.182715)
	fty (0.17584)
	cki (0.165235)
	cli (0.152812)
	lnt (0.142308)
	nca (0.136874)
	clu (0.119646)