Ss1.1-Emb1-C0005196_A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAATATTTGATTGCAATAATTTTGACCTAGAGATTCCCCTGGTAGCACACATTAAGAA CTTGTTGCAGCCAATCATTGAGCTGAATTCTCCTTTTTTGGTGTTTTCTTAGCAGAGCTC CTGGTGATGTGGAGTGTAAAACAATTGTAACAAGACAGCTTTCTTAGTTGTTTTGATCAT GAAGGTTAAATATTGTAATGTAGATACTTGAAGGACTAGGTGTCAAAGGACTACACAAAA GATCTCATGAAGGCTACATACATATTTTCTGATATATTAAAAAGGCCATGGGAGGTAAGA TTGCTAAATGTCCCGGAGAACCAGAATTATTCTCATCCAAGGGAGACAGAGATGAAGATG TGTTTCTCTTACTTATTTATCCTGTATGGCCATCTGTGAAGAGGTGGGTCCCCGGTGAGA AGGCAGCCAAGGAAGAGGAGACAAAAGGTGAAGAATCAAGGTGCAGTGAACTTGGCACTG AAGAGGTGGCAGAAGGACTGTGTCAGATGGAGAGCTGCTGTGGTGCTGCTGCTGCTGCGG CTGTGCTGCTGCTGCGGCTGTCACTCTGCAGTGGTGTCACCTGCCCAGATGAGCCTTCTG GTAACAACCTAGCAGAGAACACGTTACCTACTCATTTTTAGAGCATTTTTGTAAAATGAT TTTGTACGTGTAGGATATGAAATAGTTGTTTACAAATTACATATTAACAATAATACCTAC AAAGTACCTCTGTAGTAAAATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAATATTTGATTGCAATAATTTTGACCTAGAGATTCCCCTGGTAGCACACATTAAGAA CTTGTTGCAGCCAATCATTGAGCTGAATTCTCCTTTTTTGGTGTTTTCTTAGCAGAGCTC CTGGTGATGTGGAGTGTAAAACAATTGTAACAAGACAGCTTTCTTAGTTGTTTTGATCAT GAAGGTTAAATATTGTAATGTAGATACTTGAAGGACTAGGTGTCAAAGGACTACACAAAA GATCTCATGAAGGCTACATACATATTTTCTGATATATTAAAAAGGCCATGGGAGGTAAGA TTGCTAAATGTCCCGGAGAACCAGAATTATTCTCATCCAAGGGAGACAGAGATGAAGATG TGTTTCTCTTACTTATTTATCCTGTATGGCCATCTGTGAAGAGGTGGGTCCCCGGTGAGA AGGCAGCCAAGGAAGAGGAGACAAAAGGTGAAGAATCAAGGTGCAGTGAACTTGGCACTG AAGAGGTGGCAGAAGGACTGTGTCAGATGGAGAGCTGCTGTGGTGCTGCTGCTGCTGCGG CTGTGCTGCTGCTGCGGCTGTCACTCTGCAGTGGTGTCACCTGCCCAGATGAGCCTTCTG GTAACAACCTAGCAGAGAACACGTTACCTACTCATTTTTAGAGCATTTTTGTAAAATGAT TTTGTACGTGTAGGATATGAAATAGTTGTTTACAAATTACATATTAACAATAATACCTAC AAAGTACCTCTGTAGTAAAATATG |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-257, gnl|bosTau2|chr11 (2423570-2423325) | |
| 1-257, gnl|canFam2|chr33 (25944107-25944552) | |
| 1-257, gnl|dasNov1|scaffold_618 (162089-162483) | |
| 1-257, gnl|hg17|chr3 (120413681-120414083) | |
| 1-257, gnl|Hg17|chr3 (120414055-120413799) | |
| 1-257, gnl|loxAfr1|scaffold_80698 (4524-4925) | |
| 1-257, gnl|mm7|chr16 (38478411-38478050) | |
| 1-257, gnl|Mm7|chr16 (38478072-38478312) | |
| 1-257, gnl|monDom2|scaffold_24 (15670865-15671288) | |
| 1-257, gnl|oryCun1|scaffold_194466 (19200-18811) | |
| 1-257, gnl|panTro1|chr2 (122129509-122129911) | |
| 1-257, gnl|rheMac2|chr2 (39235977-39236379) | |
| 1-257, gnl|rn3|chr11 (63830160-63830529) | |
| 258-525, gnl|bosTau2|chr11 (2423282-2423019) | |
| 258-525, gnl|canFam2|chr33 (25943928-25944106) | |
| 258-525, gnl|dasNov1|scaffold_618 (161891-162088) | |
| 258-525, gnl|echTel1|scaffold_288311 (44943-44761) | |
| 258-525, gnl|hg17|chr3 (120413490-120413680) | |
| 258-525, gnl|Hg17|chr3 (120413756-120413489) | |
| 258-525, gnl|loxAfr1|scaffold_80698 (4370-4523) | |
| 258-525, gnl|mm7|chr16 (38478601-38478412) | |
| 258-525, gnl|Mm7|chr16 (38478347-38478604) | |
| 258-525, gnl|monDom2|scaffold_24 (15670662-15670864) | |
| 258-525, gnl|oryCun1|scaffold_194466 (19386-19201) | |
| 258-525, gnl|panTro1|chr2 (122129317-122129508) | |
| 258-525, gnl|rheMac2|chr2 (39235785-39235976) | |
| 258-525, gnl|rn3|chr11 (63829988-63830159) | |
| 548-744, gnl|bosTau2|chr11 (2423030-2422831) | |
| 548-744, gnl|Hg17|chr3 (120413500-120413286) | |
| 548-744, gnl|Mm7|chr16 (38478590-38478852) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-257, gnl|bosTau2|chr11 (2423570-2423325) | |
| 1-257, gnl|canFam2|chr33 (25944107-25944552) | |
| 1-257, gnl|dasNov1|scaffold_618 (162089-162483) | |
| 1-257, gnl|hg17|chr3 (120413681-120414083) | |
| 1-257, gnl|Hg17|chr3 (120414055-120413799) | |
| 1-257, gnl|loxAfr1|scaffold_80698 (4524-4925) | |
| 1-257, gnl|mm7|chr16 (38478411-38478050) | |
| 1-257, gnl|Mm7|chr16 (38478072-38478312) | |
| 1-257, gnl|monDom2|scaffold_24 (15670865-15671288) | |
| 1-257, gnl|oryCun1|scaffold_194466 (19200-18811) | |
| 1-257, gnl|panTro1|chr2 (122129509-122129911) | |
| 1-257, gnl|rheMac2|chr2 (39235977-39236379) | |
| 1-257, gnl|rn3|chr11 (63830160-63830529) | |
| 258-525, gnl|bosTau2|chr11 (2423282-2423019) | |
| 258-525, gnl|canFam2|chr33 (25943928-25944106) | |
| 258-525, gnl|dasNov1|scaffold_618 (161891-162088) | |
| 258-525, gnl|echTel1|scaffold_288311 (44943-44761) | |
| 258-525, gnl|hg17|chr3 (120413490-120413680) | |
| 258-525, gnl|Hg17|chr3 (120413756-120413489) | |
| 258-525, gnl|loxAfr1|scaffold_80698 (4370-4523) | |
| 258-525, gnl|mm7|chr16 (38478601-38478412) | |
| 258-525, gnl|Mm7|chr16 (38478347-38478604) | |
| 258-525, gnl|monDom2|scaffold_24 (15670662-15670864) | |
| 258-525, gnl|oryCun1|scaffold_194466 (19386-19201) | |
| 258-525, gnl|panTro1|chr2 (122129317-122129508) | |
| 258-525, gnl|rheMac2|chr2 (39235785-39235976) | |
| 258-525, gnl|rn3|chr11 (63829988-63830159) | |
| 548-744, gnl|bosTau2|chr11 (2423030-2422831) | |
| 548-744, gnl|Hg17|chr3 (120413500-120413286) | |
| 548-744, gnl|Mm7|chr16 (38478590-38478852) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| amn (0.417711) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| lin (0.145603) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| amn (0.417711) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| lin (0.145603) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) |