Non-Coding RNA Search

Ss1.1-Emb1-C0005196_H15.5

Sequence:


               
               TTGGGCATGAGCCCAGCAGTGTGCTGTGTTCCAGGAGGCCTCCCAGGGCAGGTCTCCCTT
CCCACCCAGTGCTCACGTCTCATCTCTGAAAAGCCTTATTCTAAGACCCAAGGTTTGGAT
CTCCTACCACCGGAATCCTAATATAGAAAACTTGAATTGTCACATACACCTTACAGTTGG
GACTTCTAAGAAAACACGGATACTACTGGAACTTTCCCAGCTGAGTTACCTGGTCACTTT
TCTGACACGAACCACATGGCAGCGCAGGTTTAGTGGTTCCTTGCTGGGGAGAGCAGTGAG
TTGTTGGTTTGGACATTGGTGCTGAGCAGCGGGCTCAGGGTCCTGTGGACGTGCCCCACG
CCTGCCCTGCACAGGGTCGGCAGGGAGTGTGGGACTCAGGGCAAGGGTAGACACCACTTG
TGTGAGCACTGACTTTCTCTTTTGTGCGGAATGATTTTGTCTTTAAGTTTAGGGGAGACA
GTGTTCTTTCCCACCTGAAACTGCTGCTGTGGAAGCTGGAAGCAGAGCTGCTGTGCCCAT
GGTGGGTGTCGTGGCTGTGCTCCTGCCAGCTCTGTGTTTCTGGCGTTTTGGGTGTTGTGA
AACCTCAGCTACTTCTGCCAGAGCCGGCATCGAGTTTTCCCTCCTCCCCATACTGGTTCC
TCCCTCGAGTTTCACTGAGAGGCGTGGTGTTAATGGCCTCAAGTCGTGCCAGGCCACTTC
CCCATCAGGGCTGCCCAAGGCCCTGCTTCCAGATGAGCAACTCCTGGCTGGCACCAAGAG
GTTCTTGTTGGGGTCACCAAAAGCATGCCCAGCTGCTATGAAAACTGTTGGGAATCTTAG
TTTTTTATTTTATGGTAGGTTGTATAGATTATTTATATCATCGTTTTGAGGGACTAATGA
AGGCTTATTGTGATATAATATTATTAGTGAAACTATGGAATTGTATGAAAATACTACACA
AAAAAATGAGACTATTTTGCTGATTGTAAATTTTTGTGGAGAATTTTGTGATAAATTGAG
AATTACGCTTATTTGAATCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGCATGAGCCCAGCAGTGTGCTGTGTTCCAGGAGGCCTCCCAGGGCAGGTCTCCCTT
CCCACCCAGTGCTCACGTCTCATCTCTGAAAAGCCTTATTCTAAGACCCAAGGTTTGGAT
CTCCTACCACCGGAATCCTAATATAGAAAACTTGAATTGTCACATACACCTTACAGTTGG
GACTTCTAAGAAAACACGGATACTACTGGAACTTTCCCAGCTGAGTTACCTGGTCACTTT
TCTGACACGAACCACATGGCAGCGCAGGTTTAGTGGTTCCTTGCTGGGGAGAGCAGTGAG
TTGTTGGTTTGGACATTGGTGCTGAGCAGCGGGCTCAGGGTCCTGTGGACGTGCCCCACG
CCTGCCCTGCACAGGGTCGGCAGGGAGTGTGGGACTCAGGGCAAGGGTAGACACCACTTG
TGTGAGCACTGACTTTCTCTTTTGTGCGGAATGATTTTGTCTTTAAGTTTAGGGGAGACA
GTGTTCTTTCCCACCTGAAACTGCTGCTGTGGAAGCTGGAAGCAGAGCTGCTGTGCCCAT
GGTGGGTGTCGTGGCTGTGCTCCTGCCAGCTCTGTGTTTCTGGCGTTTTGGGTGTTGTGA
AACCTCAGCTACTTCTGCCAGAGCCGGCATCGAGTTTTCCCTCCTCCCCATACTGGTTCC
TCCCTCGAGTTTCACTGAGAGGCGTGGTGTTAATGGCCTCAAGTCGTGCCAGGCCACTTC
CCCATCAGGGCTGCCCAAGGCCCTGCTTCCAGATGAGCAACTCCTGGCTGGCACCAAGAG
GTTCTTGTTGGGGTCACCAAAAGCATGCCCAGCTGCTATGAAAACTGTTGGGAATCTTAG
TTTTTTATTTTATGGTAGGTTGTATAGATTATTTATATCATCGTTTTGAGGGACTAATGA
AGGCTTATTGTGATATAATATTATTAGTGAAACTATGGAATTGTATGAAAATACTACACA
AAAAAATGAGACTATTTTGCTGATTGTAAATTTTTGTGGAGAATTTTGTGATAAATTGAG
AATTACGCTTATTTGAATCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-385, - strand, RNAz p=0.999226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-385, - strand, RNAz p=0.999226

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL833701, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL833701, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1041, gnl|bosTau2|chr7 (51905380-51904348)
               

               
               1-1041, gnl|Hg17|chr9 (92457483-92456398)
               

               
               1-1041, gnl|Mm7|chr13 (48945815-48946861)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1041, gnl|bosTau2|chr7 (51905380-51904348)
               

               
               1-1041, gnl|Hg17|chr9 (92457483-92456398)
               

               
               1-1041, gnl|Mm7|chr13 (48945815-48946861)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               nco (0.161734)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               nco (0.161734)

	1-1041, gnl\|bosTau2\|chr7 (51905380-51904348)
	1-1041, gnl\|Hg17\|chr9 (92457483-92456398)
	1-1041, gnl\|Mm7\|chr13 (48945815-48946861)