Non-Coding RNA Search

Ss1.1-Emb1-C0005211_A14.5

Sequence:


               
               CTTGAGAAGGAGGCAAAGATGGCGGAGTGAGGCACGTCGCAGCTCGCTGGCCTTTGGGCC
GGGGGGCGGGCGGCCCCCGGGCGCTCGAGTGCTTCTTCTGGCCAGTGCGAGGTTTTGAAT
CAAAACGGTCTTGTCTTCAACCAGAAGAGATTATTCAAGTTCAGTTTGGAATTAAGGTAT
TTCTGTGTTGTCTCCTGAGTGAGGTTGTCTTGCTCCAATTATTGGGCCACCTTCCCCATT
AAAATGTGGATATCTCTTCTCTACACATTACCTCTGTGATTTGGATTGGAAAAGGCTGCT
TTTCTTTTCGTTCCACCTTCTCAGATTCAACACAGAGAAGCTCCTGGGATGCATTCATCC
TGCCAACTTCTCCAGGAAAAAAGAGGCAACTGACATGCATCTTCTGCTGCTCTTTGCTTA
ATCACAAAGAAATTATTTTACATGCTAAAGGCCGGTACCTAATTTAAAGCAGGTGCTTAA
ATGGTGATATCTGTGAGTTCTTTACATTTTGTTCCAAACAAGAAAACTAAATAAATAGCA
AGTATGGATGACATGAGGGTTTTTTTTTTTAATGTCTTCCAGTTTTTGGTCACCATCATG
ATACGTACGCATAGTTGAGACTGCAGCAGTAGATTCCAAATTATGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAGAAGGAGGCAAAGATGGCGGAGTGAGGCACGTCGCAGCTCGCTGGCCTTTGGGCC
GGGGGGCGGGCGGCCCCCGGGCGCTCGAGTGCTTCTTCTGGCCAGTGCGAGGTTTTGAAT
CAAAACGGTCTTGTCTTCAACCAGAAGAGATTATTCAAGTTCAGTTTGGAATTAAGGTAT
TTCTGTGTTGTCTCCTGAGTGAGGTTGTCTTGCTCCAATTATTGGGCCACCTTCCCCATT
AAAATGTGGATATCTCTTCTCTACACATTACCTCTGTGATTTGGATTGGAAAAGGCTGCT
TTTCTTTTCGTTCCACCTTCTCAGATTCAACACAGAGAAGCTCCTGGGATGCATTCATCC
TGCCAACTTCTCCAGGAAAAAAGAGGCAACTGACATGCATCTTCTGCTGCTCTTTGCTTA
ATCACAAAGAAATTATTTTACATGCTAAAGGCCGGTACCTAATTTAAAGCAGGTGCTTAA
ATGGTGATATCTGTGAGTTCTTTACATTTTGTTCCAAACAAGAAAACTAAATAAATAGCA
AGTATGGATGACATGAGGGTTTTTTTTTTTAATGTCTTCCAGTTTTTGGTCACCATCATG
ATACGTACGCATAGTTGAGACTGCAGCAGTAGATTCCAAATTATGCGT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-645, gnl|bosTau2|chr6 (41533969-41533293)
               

               
               7-645, gnl|Hg17|chr2 (172855312-172856101)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-645, gnl|bosTau2|chr6 (41533969-41533293)
               

               
               7-645, gnl|Hg17|chr2 (172855312-172856101)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nms (0.855432)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.855432)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	7-645, gnl\|bosTau2\|chr6 (41533969-41533293)
	7-645, gnl\|Hg17\|chr2 (172855312-172856101)

	nms (0.855432)
	hea (0.204499)
	sag (0.182715)
	ton (0.1755)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	cag (0.151194)
	isp (0.150376)
	lnt (0.142308)
	che (0.136314)
	ssp (0.13552)
	cly (0.120642)
	ldo (0.0970026)