Non-Coding RNA Search

Ss1.1-Emb1-C0005211_C15.5

Sequence:


               
               GTCCAGCCTGGGGACAGAGTGCACGTCACAGGCATCTACCGAGCTGTCCCCATCCGCATC
AACCCCAGAGTGAGCAACGTGAAGTCTGTCTACAAAACCCACATTGACGTCATTCACTAC
CGCAAAACCGACTCCAAACGTCTGCACGGCCTCGATGAAGAGGCGGAGCAGAAACTTTTC
TCAGAGAAACGTGTGGAATTGCTTAAGGAGCTTTCCAGAAAACCAGACATTTACGAGAGA
CTTGCTTCAGCCTTGGCTCCGAGCATTTATGAACACGAAGATATAAAGAAGGGAATCTTG
CTTCAGCTCTTTGGCGGAACAAGGAAGGACTTCAGCCACACAGGGAGAGGCAAGTTCCGG
GCCGAGATCAACATCCTGCTGTGCGGGGACCCCGGGACCAGCAAGTCCCAGCTGCTGCAG
TACGTGTACAACCTGGTGCCGCGGGGCCAGTACACATCCGGGAAGGGCTCCAGTGCCGTC
GGCCTCACCGCCTATGTCACCAAGGACCCCGAGACGCGGCAGCTCGTGCTGCAGACGGGG
GCCCTGGTCCTGAGTGACAATGGCATCTGCTGCATCGACGAGTTCGACAAGATGAACGAG
AGCACGCGGTCGGTGCTGCACGAGGTCATGGAGCAGCAGACACTCTCCATCGCCAAGGCT
GGGATCATCTGTCAGCTCAACGCCCGCACCTCCATCCTGGCAGCTGCAAACCCTATCGAG
TCTCAGTGGAACCCGAAAAAAACCACCATTGAAAACATCCAGCTGCCCCACACACTGTTA
TCGAGGTTTGACCTCATCTTCCTCATGCTGGACCCCCAGGACGAAGCCTATGACCGGCGT
CTGGCGCACCACCTGGTGTCCCTGTACTACCAAAGCGAGGAGCAGGCGCAGGAGGAGGTC
ATGGACATGGCAGTGCTCAGGGACTACATCGCCTATGCACACAGCACCGTCCTGCCCCGG
CTGAGCCAGGACGCCAGCCAGGCGCTCATCGAGGCTTATGTGGACATGAGGAAGATTGGC
AGCAGCCGAGGGATGGTGTCCGCGTACCCCCGGCAGCTGGAGTCACTGATCCGTCTAGCC
GAAGCCCACGCCAAAGTGCGCTTTTCAAACAAGGTAGAGGCAGTTGACGTGGAGGAGGCG
AAGCGCCTGCACCGGGAGGCCCTAAAGCAGTCTGCGACCGACCCTCGGACCGGCATTGTG
GACATTTCCATCCTGACCACAGGAATGAGTGCCACTTCTCGTAAGCGGAAAGAAGAGTTA
GCTGAAGCATTGAAAAAGCTTATTTTATCCAAGGGCAAAACACCAGCCTTGAAATATCAG
CAACTTTTTGAAGATATTCGGGGACAGTCTGACATAGCAATTACCAGGGACATGTTTGAA
GAAGCACTACGTGCCCTGGCCGATGACGACTTCCTGACGGTGACTGGCAAGACAGTGCGC
TTGCTCTGAAGCCCGTGAGCAGCCTTGGGGAGAGCCTCGGGGTCGTTACGGGCTCCTTAG
ATGTTCAGTTTACTAGAGAGGTGCCGTGCAGAGTAAAGAGCACACGGTGGAGAGTATCTT
CCTGTGTCCTCAAGTCCTGCTTCTGAGCACTAGGGCTGGACCATGTACAGACCACAGGAG
GCAGCCAGGTGGGTGTTGGCCTTGTGCTGGATCTGTGATGGTGCCTGGAGGGTTCCTGTC
CTTGCTGAGTCCTGGCTTGTTCCTTTGGCTACTATGAGGCTGGAAACAGCCCAATGTCTG
GTCACTTTCTATTATTTCATCCTAATATGTATCAAACATTTTCCTCAATAAATGATAGAA
TAAATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAGCCTGGGGACAGAGTGCACGTCACAGGCATCTACCGAGCTGTCCCCATCCGCATC
AACCCCAGAGTGAGCAACGTGAAGTCTGTCTACAAAACCCACATTGACGTCATTCACTAC
CGCAAAACCGACTCCAAACGTCTGCACGGCCTCGATGAAGAGGCGGAGCAGAAACTTTTC
TCAGAGAAACGTGTGGAATTGCTTAAGGAGCTTTCCAGAAAACCAGACATTTACGAGAGA
CTTGCTTCAGCCTTGGCTCCGAGCATTTATGAACACGAAGATATAAAGAAGGGAATCTTG
CTTCAGCTCTTTGGCGGAACAAGGAAGGACTTCAGCCACACAGGGAGAGGCAAGTTCCGG
GCCGAGATCAACATCCTGCTGTGCGGGGACCCCGGGACCAGCAAGTCCCAGCTGCTGCAG
TACGTGTACAACCTGGTGCCGCGGGGCCAGTACACATCCGGGAAGGGCTCCAGTGCCGTC
GGCCTCACCGCCTATGTCACCAAGGACCCCGAGACGCGGCAGCTCGTGCTGCAGACGGGG
GCCCTGGTCCTGAGTGACAATGGCATCTGCTGCATCGACGAGTTCGACAAGATGAACGAG
AGCACGCGGTCGGTGCTGCACGAGGTCATGGAGCAGCAGACACTCTCCATCGCCAAGGCT
GGGATCATCTGTCAGCTCAACGCCCGCACCTCCATCCTGGCAGCTGCAAACCCTATCGAG
TCTCAGTGGAACCCGAAAAAAACCACCATTGAAAACATCCAGCTGCCCCACACACTGTTA
TCGAGGTTTGACCTCATCTTCCTCATGCTGGACCCCCAGGACGAAGCCTATGACCGGCGT
CTGGCGCACCACCTGGTGTCCCTGTACTACCAAAGCGAGGAGCAGGCGCAGGAGGAGGTC
ATGGACATGGCAGTGCTCAGGGACTACATCGCCTATGCACACAGCACCGTCCTGCCCCGG
CTGAGCCAGGACGCCAGCCAGGCGCTCATCGAGGCTTATGTGGACATGAGGAAGATTGGC
AGCAGCCGAGGGATGGTGTCCGCGTACCCCCGGCAGCTGGAGTCACTGATCCGTCTAGCC
GAAGCCCACGCCAAAGTGCGCTTTTCAAACAAGGTAGAGGCAGTTGACGTGGAGGAGGCG
AAGCGCCTGCACCGGGAGGCCCTAAAGCAGTCTGCGACCGACCCTCGGACCGGCATTGTG
GACATTTCCATCCTGACCACAGGAATGAGTGCCACTTCTCGTAAGCGGAAAGAAGAGTTA
GCTGAAGCATTGAAAAAGCTTATTTTATCCAAGGGCAAAACACCAGCCTTGAAATATCAG
CAACTTTTTGAAGATATTCGGGGACAGTCTGACATAGCAATTACCAGGGACATGTTTGAA
GAAGCACTACGTGCCCTGGCCGATGACGACTTCCTGACGGTGACTGGCAAGACAGTGCGC
TTGCTCTGAAGCCCGTGAGCAGCCTTGGGGAGAGCCTCGGGGTCGTTACGGGCTCCTTAG
ATGTTCAGTTTACTAGAGAGGTGCCGTGCAGAGTAAAGAGCACACGGTGGAGAGTATCTT
CCTGTGTCCTCAAGTCCTGCTTCTGAGCACTAGGGCTGGACCATGTACAGACCACAGGAG
GCAGCCAGGTGGGTGTTGGCCTTGTGCTGGATCTGTGATGGTGCCTGGAGGGTTCCTGTC
CTTGCTGAGTCCTGGCTTGTTCCTTTGGCTACTATGAGGCTGGAAACAGCCCAATGTCTG
GTCACTTTCTATTATTTCATCCTAATATGTATCAAACATTTTCCTCAATAAATGATAGAA
TAAATAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50737583|ref|XP_419194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50737583|ref|XP_419194.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               409-528, - strand, RNAz p=0.531612

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-528, - strand, RNAz p=0.531612

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-707, gnl|bosTau2|chr6 (13648250-13647551)
               

               
               1-707, gnl|Hg17|chr8 (49042568-49046016)
               

               
               1-707, gnl|Mm7|chr17 (36014009-36013313)
               


               
               290-658, gnl|bosTau2|chr14 (10136160-10135792)
               

               
               290-658, gnl|Hg17|chr8 (49045622-49045990)
               

               
               290-658, gnl|Mm7|chr16 (15169308-15168940)
               


               
               784-994, gnl|bosTau2|chr14 (10134549-10134339)
               

               
               784-994, gnl|Hg17|chr8 (49047968-49048178)
               

               
               784-994, gnl|Mm7|chr16 (15167497-15167287)
               


               
               1019-1462, gnl|bosTau2|chr6 (13646775-13646340)
               

               
               1019-1462, gnl|Hg17|chr8 (49049872-49051905)
               

               
               1019-1462, gnl|Mm7|chr17 (36012956-36012527)
               


               
               1203-1376, gnl|bosTau2|chr14 (10133497-10133320)
               

               
               1203-1376, gnl|Hg17|chr8 (49050806-49050984)
               

               
               1203-1376, gnl|Mm7|chr16 (15165356-15165186)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-707, gnl|bosTau2|chr6 (13648250-13647551)
               

               
               1-707, gnl|Hg17|chr8 (49042568-49046016)
               

               
               1-707, gnl|Mm7|chr17 (36014009-36013313)
               


               
               290-658, gnl|bosTau2|chr14 (10136160-10135792)
               

               
               290-658, gnl|Hg17|chr8 (49045622-49045990)
               

               
               290-658, gnl|Mm7|chr16 (15169308-15168940)
               


               
               784-994, gnl|bosTau2|chr14 (10134549-10134339)
               

               
               784-994, gnl|Hg17|chr8 (49047968-49048178)
               

               
               784-994, gnl|Mm7|chr16 (15167497-15167287)
               


               
               1019-1462, gnl|bosTau2|chr6 (13646775-13646340)
               

               
               1019-1462, gnl|Hg17|chr8 (49049872-49051905)
               

               
               1019-1462, gnl|Mm7|chr17 (36012956-36012527)
               


               
               1203-1376, gnl|bosTau2|chr14 (10133497-10133320)
               

               
               1203-1376, gnl|Hg17|chr8 (49050806-49050984)
               

               
               1203-1376, gnl|Mm7|chr16 (15165356-15165186)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cje (0.330469)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               eru (0.240096)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               eru (0.240096)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-707, gnl\|bosTau2\|chr6 (13648250-13647551)
	1-707, gnl\|Hg17\|chr8 (49042568-49046016)
	1-707, gnl\|Mm7\|chr17 (36014009-36013313)

	290-658, gnl\|bosTau2\|chr14 (10136160-10135792)
	290-658, gnl\|Hg17\|chr8 (49045622-49045990)
	290-658, gnl\|Mm7\|chr16 (15169308-15168940)

	784-994, gnl\|bosTau2\|chr14 (10134549-10134339)
	784-994, gnl\|Hg17\|chr8 (49047968-49048178)
	784-994, gnl\|Mm7\|chr16 (15167497-15167287)

	1019-1462, gnl\|bosTau2\|chr6 (13646775-13646340)
	1019-1462, gnl\|Hg17\|chr8 (49049872-49051905)
	1019-1462, gnl\|Mm7\|chr17 (36012956-36012527)

	1203-1376, gnl\|bosTau2\|chr14 (10133497-10133320)
	1203-1376, gnl\|Hg17\|chr8 (49050806-49050984)
	1203-1376, gnl\|Mm7\|chr16 (15165356-15165186)

	cje (0.330469)
	cag (0.302389)
	eje (0.296501)
	eru (0.240096)
	nbm (0.198649)
	eye (0.170503)
	lnt (0.142308)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)