Non-Coding RNA Search

Ss1.1-Emb1-C0005211_J19.5

Sequence:


               
               TTAGGCGACATGAGATGATTCACACTAGAGAGAAACCAAGTGAATGTCATCTATGTGGGA
AGGCCTTCGCTCATTGTTCTGACCTTAGAAAACACGAGAGAACTCACTTTGGAGAGAAAC
CCTATGGGTGCAATCTATGTGGTAAAACATTCAGTAAAACTTCTTACCTTAGACAACATG
AGAGGACTCACAATGGAGAGAAACCATATGAATGTCATCTATGTGGGAAAGCCTTCACTC
ACTGTTCTCACCTTAGAAAACATGAGAGAACTCATACAGGGGAGAAGCCATACGAATGTC
ATGTATGTGGAAAAGCCTTCACTGAATCATCTGTTCTTAGACGACATGAGAGAACTCACA
CTGGAGAGAAACCATATGAATGTCATCTATGTTGGAAAGCCTTCACTGATTCTTCTGTCC
TTAAGCGACATGAGAGAACTCACACTGGAGAAAAACCGTATGAATGTCAGCTGTGTGGGA
AAGCCTTCAATCACTCTTCTGTCCTTAGACGACATGAAAGAACTCACACTGGTGAGAAGC
CGTATGAATGCAATATATGTGGTAAAGCCTTCAATAGAAGTTATAACTTTAGATTGCATA
AGAGAATTCACACTGGAGAGAAACCATATAAATGTTATATATGTGGGAAAGCCTTCAGTA
AATATTTTAACCTTAGACAACACGAGAGAACTCACACGATAAAGGTAATAAATGTGGAAG
GATCACCACCCAGAGCTTCAAACTATAAACACTCTTAAGGAAGGAACACTATGTTTATAT
TCAATGTATAAGAGCCTTTATTCATCCTTATTACTTCACTCAATTAAAGTTACTTCAAAG
TTGATAGAATTCATATGTTTGTCACTATATATTATAACAAAACCTTTGGCAGTAGACTCA
CCTGGGAGAAGTGAAACTATAAATGAAATGAATGTGGAAGAATCTTCATCCACAGCTGTA
AATGTTAAACTAAATGGGTAAATCACATGTCAGAGAAATTCTATGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGCGACATGAGATGATTCACACTAGAGAGAAACCAAGTGAATGTCATCTATGTGGGA
AGGCCTTCGCTCATTGTTCTGACCTTAGAAAACACGAGAGAACTCACTTTGGAGAGAAAC
CCTATGGGTGCAATCTATGTGGTAAAACATTCAGTAAAACTTCTTACCTTAGACAACATG
AGAGGACTCACAATGGAGAGAAACCATATGAATGTCATCTATGTGGGAAAGCCTTCACTC
ACTGTTCTCACCTTAGAAAACATGAGAGAACTCATACAGGGGAGAAGCCATACGAATGTC
ATGTATGTGGAAAAGCCTTCACTGAATCATCTGTTCTTAGACGACATGAGAGAACTCACA
CTGGAGAGAAACCATATGAATGTCATCTATGTTGGAAAGCCTTCACTGATTCTTCTGTCC
TTAAGCGACATGAGAGAACTCACACTGGAGAAAAACCGTATGAATGTCAGCTGTGTGGGA
AAGCCTTCAATCACTCTTCTGTCCTTAGACGACATGAAAGAACTCACACTGGTGAGAAGC
CGTATGAATGCAATATATGTGGTAAAGCCTTCAATAGAAGTTATAACTTTAGATTGCATA
AGAGAATTCACACTGGAGAGAAACCATATAAATGTTATATATGTGGGAAAGCCTTCAGTA
AATATTTTAACCTTAGACAACACGAGAGAACTCACACGATAAAGGTAATAAATGTGGAAG
GATCACCACCCAGAGCTTCAAACTATAAACACTCTTAAGGAAGGAACACTATGTTTATAT
TCAATGTATAAGAGCCTTTATTCATCCTTATTACTTCACTCAATTAAAGTTACTTCAAAG
TTGATAGAATTCATATGTTTGTCACTATATATTATAACAAAACCTTTGGCAGTAGACTCA
CCTGGGAGAAGTGAAACTATAAATGAAATGAATGTGGAAGAATCTTCATCCACAGCTGTA
AATGTTAAACTAAATGGGTAAATCACATGTCAGAGAAATTCTATGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4159888|gb|AAD05197.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4159888|gb|AAD05197.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-319, + strand, RNAz p=0.964931

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-319, + strand, RNAz p=0.964931

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-1001, gnl|bosTau2|chr13 (39984206-39985197)
               

               
               1-1001, gnl|Hg17|chr8 (185644-186654)
               


               
               9-722, gnl|bosTau2|chr10 (8996783-8996068)
               

               
               9-722, gnl|Hg17|chr19 (42818588-42817789)
               

               
               9-722, gnl|Mm7|chr2 (127310214-127309583)
               


               
               13-694, gnl|bosTau2|chr10 (8996695-8996014)
               

               
               13-694, gnl|Hg17|chr19 (42818500-42817755)
               

               
               13-694, gnl|Mm7|chr2 (127310126-127309529)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1001, gnl|bosTau2|chr13 (39984206-39985197)
               

               
               1-1001, gnl|Hg17|chr8 (185644-186654)
               


               
               9-722, gnl|bosTau2|chr10 (8996783-8996068)
               

               
               9-722, gnl|Hg17|chr19 (42818588-42817789)
               

               
               9-722, gnl|Mm7|chr2 (127310214-127309583)
               


               
               13-694, gnl|bosTau2|chr10 (8996695-8996014)
               

               
               13-694, gnl|Hg17|chr19 (42818500-42817755)
               

               
               13-694, gnl|Mm7|chr2 (127310126-127309529)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.543183)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

	1-1001, gnl\|bosTau2\|chr13 (39984206-39985197)
	1-1001, gnl\|Hg17\|chr8 (185644-186654)

	9-722, gnl\|bosTau2\|chr10 (8996783-8996068)
	9-722, gnl\|Hg17\|chr19 (42818588-42817789)
	9-722, gnl\|Mm7\|chr2 (127310214-127309583)

	13-694, gnl\|bosTau2\|chr10 (8996695-8996014)
	13-694, gnl\|Hg17\|chr19 (42818500-42817755)
	13-694, gnl\|Mm7\|chr2 (127310126-127309529)

	fce (0.543183)
	bfe (0.299715)
	kid (0.259471)
	cbe (0.239234)
	tes (0.207814)
	rec (0.17307)
	fco (0.157208)
	ova (0.129132)
	thg (0.126791)
	jej (0.0989218)