Non-Coding RNA Search

Ss1.1-Emb1-C0005211_N07.5

Sequence:


               
               TGGAAACGCTTCAGGTAATTTGGTCTCAAGTAGCACATTGGAAAAGAAAATTGGAGATCT
TGAAAAGGAAGTTGTAAGAGAAAGACAAGAAAATCTAAGACTTGTGAGACTAATGCAAGA
TAAGGAGGAAATGATCGGAAAACTTAAAGAGGAAATTGATTTGTTAAATAGAGACCTAGA
TGACATAGAAGATGAAAATGAACAACTAAAGCAGGAGAATAAAACTCTTTTGAAAGTCGT
TGGGCAGCTAACAAGGTAGAAGATTCAAGGCTCAGTGTGGAAAAAATGTTTAAAACTACT
GATTGAATGTTATGGTTAATGCTAGGACAATATTCCTATGCTGTAATGCAGTAAACTAAG
TATGTATATTTATTTCTAGAAAACAGTGGATGTTTATTTGCAAACTATTTCTTTTTCATT
ATCAGTTTTAAAAAATATCAACCTTGTATTTCATGGATAAGTAACATCTTTTAGTTGTTA
AACTGGTAGGTTATGCCTCTTTTGGTTTTGTGTGGTATTCAGATAATATACGGTTTAAAG
TCACAACCATCTGAACATATTTCATCTATGGTAGTGCATTTTCCTCCCTTAAAAAATACA
CATAGTCTTTGTTTACATGAATTCAAATACTTTGGGGGGGTTACCTGCAAATGCCTTATC
ACTAATGTGTGAAACCTTTTATATGTTGATTTACTCATAAACGACTTTGTCTCCTGTCAT
TTGTTCCTTCAACTTATTCTAAGCAGTTTAGAGGAACATAGAATCACACTATTTTGTATA
ACAGTCATCTTTAAAAAGGAAAGGTATTATAAAAAAGTCACTTAATATCATGTACTAGTT
GGCTAAATATACGATTTAAGTTAATACTTGAATTGTGCTATATAGTAAATTAAAATATAC
TATTTTGTATTCAAATATTGAAAAAATTTACAATCACTTTGACTTCTGAAAAACATACAA
TTGTAATTTTTATGTAAAATTTCTTATGTAGGTACTACCTTTTTTTAATTATACCAAGGT
TTACTAGTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAACGCTTCAGGTAATTTGGTCTCAAGTAGCACATTGGAAAAGAAAATTGGAGATCT
TGAAAAGGAAGTTGTAAGAGAAAGACAAGAAAATCTAAGACTTGTGAGACTAATGCAAGA
TAAGGAGGAAATGATCGGAAAACTTAAAGAGGAAATTGATTTGTTAAATAGAGACCTAGA
TGACATAGAAGATGAAAATGAACAACTAAAGCAGGAGAATAAAACTCTTTTGAAAGTCGT
TGGGCAGCTAACAAGGTAGAAGATTCAAGGCTCAGTGTGGAAAAAATGTTTAAAACTACT
GATTGAATGTTATGGTTAATGCTAGGACAATATTCCTATGCTGTAATGCAGTAAACTAAG
TATGTATATTTATTTCTAGAAAACAGTGGATGTTTATTTGCAAACTATTTCTTTTTCATT
ATCAGTTTTAAAAAATATCAACCTTGTATTTCATGGATAAGTAACATCTTTTAGTTGTTA
AACTGGTAGGTTATGCCTCTTTTGGTTTTGTGTGGTATTCAGATAATATACGGTTTAAAG
TCACAACCATCTGAACATATTTCATCTATGGTAGTGCATTTTCCTCCCTTAAAAAATACA
CATAGTCTTTGTTTACATGAATTCAAATACTTTGGGGGGGTTACCTGCAAATGCCTTATC
ACTAATGTGTGAAACCTTTTATATGTTGATTTACTCATAAACGACTTTGTCTCCTGTCAT
TTGTTCCTTCAACTTATTCTAAGCAGTTTAGAGGAACATAGAATCACACTATTTTGTATA
ACAGTCATCTTTAAAAAGGAAAGGTATTATAAAAAAGTCACTTAATATCATGTACTAGTT
GGCTAAATATACGATTTAAGTTAATACTTGAATTGTGCTATATAGTAAATTAAAATATAC
TATTTTGTATTCAAATATTGAAAAAATTTACAATCACTTTGACTTCTGAAAAACATACAA
TTGTAATTTTTATGTAAAATTTCTTATGTAGGTACTACCTTTTTTTAATTATACCAAGGT
TTACTAGTGAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61839869|ref|XP_611967.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839869|ref|XP_611967.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               160-1032, gnl|bosTau2|chr5 (5294722-5293860)
               

               
               160-1032, gnl|Hg17|chr12 (78488955-78488100)
               

               
               160-1032, gnl|Mm7|chr10 (107875706-107876567)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-1032, gnl|bosTau2|chr5 (5294722-5293860)
               

               
               160-1032, gnl|Hg17|chr12 (78488955-78488100)
               

               
               160-1032, gnl|Mm7|chr10 (107875706-107876567)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               liv (0.146284)

	160-1032, gnl\|bosTau2\|chr5 (5294722-5293860)
	160-1032, gnl\|Hg17\|chr12 (78488955-78488100)
	160-1032, gnl\|Mm7\|chr10 (107875706-107876567)