Ss1.1-Emb1-C0005211_O22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATCATGTCCCTGCACACCGAAATCATGGAGCTACAGAAGAGCCCCTATGGACGGCGTC AGGGAGACTTGATGGAATCTCTGGAACAGCGCGCCATTGATCTCTATAAGCAGTTAAAGC ACAGACCTGCAGATCACTCTTACAGCGACAGCACGGAGATGGTGAAAATCATTGTGCATA CTGTGCAGAGTCAGGACCGGGTTCTCAAGGAGCTGTTTGGTCATTTGAGCAAGTTGTTGG GCTGTAAGCAGAAGATTATTGATCTACTGCCCAAGGTGGAGATGGCTCTCAGTAACATCA AAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATATGGCATC TCCTTAAAATTGCCTGTACACAGAGTTCTGCTCGGTCCCTTGTAGGATCCAGTCTAGAAG GTGTAACCCCTCAGGCCTCAGCATGGGTGCCCCCAACTTCAGCAGAACGTGAACGTCCTC TGTCATGCGTGGTAACTCCTCAAGATGGGGAGACTTTAGCACAAATGATAGAAGAAAATT TGAACTGTCTTGGCCATTTAAGCTCTATTATTCATGAAGCAAATGAGAAACAGGGCACTA ATATGATGAATCTTGATTGGAGTTGGTTAACAGGATGACTTGACCCCAAACTTATGAAGT TGTTGCTGGAAATTTTTTTCTCCTGTGAAATCATTCTTCAGACACCTGTCAATGGACGTT TGAACAGAGAATTTTATAAGTCAGTGGACTTGTTTAAATAATACAGCTACTTAGCAACAC TGGAATCCATTTATCTACAAATTTGGTAAAACATTACTGAAGTATCTTTTAACATTTAAC TTTTGGTCATAAGGCCAGAATAATGTATACAGAGAAGAAAATCTCAGCTAACCTCTAAAT TGTTTGCCTGTGTTTCTATGTGGAAGAGACTGCTCACAAGTAGAAGTGTAACTTCTTGAA GAATAAACCCTACTTCCTTGTGTTGCACTCAAGAGTACTCTTCCTGGCATCATAGGAGTT ATTTTAATCCAATTTTCACTTGTACTGCACATTTGACAAGATTGTGCATTTGTGCCTTTA ATATCATTGATTCTTATAAATCTTAAGTGTGCTGTGTGTATATGTATTTAAGATGTACAT TTAATAATATCAGAGAAGATGCTTGTTAATTTATAATGTATTTGAAAACATCTGTTTTTC ATTTGTAAAAATGGATCTTTTAAGAATCTTTTATGTCTTATCATACAAATGCATAAAGAT CTGCACTCCCTTATCTGTAATTCCAAAATCCAAAAAGCTCTAAAAATAATGTATTTCATA AGCTTGGTGACAAAATTTGTTTGCACATCTAACCTGAACTGACATTATGACTCTACTTAC ATCATTTAGTGTGAACATTCATTTGTTTTGCTGCAGAAGTATTAACATGTTTGATTGTTT ATGGGGAGGGTGCTGCCACAGACCCTGCCTGGGTATATGCAGTATGGTATGTGCACTGAA TTATCTTTCTAAAATCTGAAAATTTCATAATTCTGGAACATCTGGCCCAAAGGGTTTCAG ATAAAGAGTTGTGGATCTATCATCTGTAAAATAATTTAGAAGGTTTTTGTTAAAAAAAAA ATGTGAAATGTTTTGTATTCTAGACAGTTTTTCACTTTGTATTAAATGATTTTTAAATTT CAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATCATGTCCCTGCACACCGAAATCATGGAGCTACAGAAGAGCCCCTATGGACGGCGTC AGGGAGACTTGATGGAATCTCTGGAACAGCGCGCCATTGATCTCTATAAGCAGTTAAAGC ACAGACCTGCAGATCACTCTTACAGCGACAGCACGGAGATGGTGAAAATCATTGTGCATA CTGTGCAGAGTCAGGACCGGGTTCTCAAGGAGCTGTTTGGTCATTTGAGCAAGTTGTTGG GCTGTAAGCAGAAGATTATTGATCTACTGCCCAAGGTGGAGATGGCTCTCAGTAACATCA AAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATATGGCATC TCCTTAAAATTGCCTGTACACAGAGTTCTGCTCGGTCCCTTGTAGGATCCAGTCTAGAAG GTGTAACCCCTCAGGCCTCAGCATGGGTGCCCCCAACTTCAGCAGAACGTGAACGTCCTC TGTCATGCGTGGTAACTCCTCAAGATGGGGAGACTTTAGCACAAATGATAGAAGAAAATT TGAACTGTCTTGGCCATTTAAGCTCTATTATTCATGAAGCAAATGAGAAACAGGGCACTA ATATGATGAATCTTGATTGGAGTTGGTTAACAGGATGACTTGACCCCAAACTTATGAAGT TGTTGCTGGAAATTTTTTTCTCCTGTGAAATCATTCTTCAGACACCTGTCAATGGACGTT TGAACAGAGAATTTTATAAGTCAGTGGACTTGTTTAAATAATACAGCTACTTAGCAACAC TGGAATCCATTTATCTACAAATTTGGTAAAACATTACTGAAGTATCTTTTAACATTTAAC TTTTGGTCATAAGGCCAGAATAATGTATACAGAGAAGAAAATCTCAGCTAACCTCTAAAT TGTTTGCCTGTGTTTCTATGTGGAAGAGACTGCTCACAAGTAGAAGTGTAACTTCTTGAA GAATAAACCCTACTTCCTTGTGTTGCACTCAAGAGTACTCTTCCTGGCATCATAGGAGTT ATTTTAATCCAATTTTCACTTGTACTGCACATTTGACAAGATTGTGCATTTGTGCCTTTA ATATCATTGATTCTTATAAATCTTAAGTGTGCTGTGTGTATATGTATTTAAGATGTACAT TTAATAATATCAGAGAAGATGCTTGTTAATTTATAATGTATTTGAAAACATCTGTTTTTC ATTTGTAAAAATGGATCTTTTAAGAATCTTTTATGTCTTATCATACAAATGCATAAAGAT CTGCACTCCCTTATCTGTAATTCCAAAATCCAAAAAGCTCTAAAAATAATGTATTTCATA AGCTTGGTGACAAAATTTGTTTGCACATCTAACCTGAACTGACATTATGACTCTACTTAC ATCATTTAGTGTGAACATTCATTTGTTTTGCTGCAGAAGTATTAACATGTTTGATTGTTT ATGGGGAGGGTGCTGCCACAGACCCTGCCTGGGTATATGCAGTATGGTATGTGCACTGAA TTATCTTTCTAAAATCTGAAAATTTCATAATTCTGGAACATCTGGCCCAAAGGGTTTCAG ATAAAGAGTTGTGGATCTATCATCTGTAAAATAATTTAGAAGGTTTTTGTTAAAAAAAAA ATGTGAAATGTTTTGTATTCTAGACAGTTTTTCACTTTGTATTAAATGATTTTTAAATTT CAAAAAAAAAAA |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 228-377, gnl|bosTau2|chr26 (11894117-11893968) | |
| 228-377, gnl|canFam2|chr28 (15965714-15965920) | |
| 228-377, gnl|danRer3|chr13 (26061283-26061488) | |
| 228-377, gnl|dasNov1|scaffold_11855 (45486-45692) | |
| 228-377, gnl|echTel1|scaffold_323659 (46422-46220) | |
| 228-377, gnl|fr1|chrUn (16532852-16533008) | |
| 228-377, gnl|galGal2|chr6 (8665701-8665503) | |
| 228-377, gnl|hg17|chr10 (101943707-101943913) | |
| 228-377, gnl|Hg17|chr10 (101943880-101943731) | |
| 228-377, gnl|loxAfr1|scaffold_6535 (27437-27231) | |
| 228-377, gnl|mm7|chr19 (43972147-43972349) | |
| 228-377, gnl|Mm7|chr19 (43972315-43972166) | |
| 228-377, gnl|monDom2|scaffold_41 (10415981-10416150) | |
| 228-377, gnl|oryCun1|scaffold_191349 (2185-2384) | |
| 228-377, gnl|panTro1|chr8 (103686773-103686979) | |
| 228-377, gnl|rheMac2|chr9 (99794533-99794739) | |
| 228-377, gnl|rn3|chr1 (249411553-249411351) | |
| 228-377, gnl|tetNig1|chr17 (4585625-4585479) | |
| 228-377, gnl|xenTro1|scaffold_444 (995553-995738) | |
| 508-608, gnl|bosTau2|chr26 (11891109-11891009) | |
| 508-608, gnl|canFam2|chr28 (15962882-15963020) | |
| 508-608, gnl|dasNov1|scaffold_11855 (42802-42932) | |
| 508-608, gnl|echTel1|scaffold_323659 (49411-49273) | |
| 508-608, gnl|galGal2|chr6 (8667935-8667799) | |
| 508-608, gnl|hg17|chr10 (101940600-101940738) | |
| 508-608, gnl|Hg17|chr10 (101940716-101940616) | |
| 508-608, gnl|loxAfr1|scaffold_6535 (30255-30117) | |
| 508-608, gnl|mm7|chr19 (43969288-43969426) | |
| 508-608, gnl|Mm7|chr19 (43969404-43969304) | |
| 508-608, gnl|monDom2|scaffold_41 (10411939-10412066) | |
| 508-608, gnl|oryCun1|scaffold_212576 (22518-22656) | |
| 508-608, gnl|panTro1|chr8 (103683679-103683817) | |
| 508-608, gnl|rheMac2|chr9 (99791419-99791557) | |
| 508-608, gnl|rn3|chr1 (249414495-249414357) | |
| 977-1559, gnl|bosTau2|chr26 (11889851-11889244) | |
| 977-1559, gnl|Hg17|chr10 (101938843-101938248) | |
| 977-1559, gnl|Mm7|chr19 (43967889-43967340) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 228-377, gnl|bosTau2|chr26 (11894117-11893968) | |
| 228-377, gnl|canFam2|chr28 (15965714-15965920) | |
| 228-377, gnl|danRer3|chr13 (26061283-26061488) | |
| 228-377, gnl|dasNov1|scaffold_11855 (45486-45692) | |
| 228-377, gnl|echTel1|scaffold_323659 (46422-46220) | |
| 228-377, gnl|fr1|chrUn (16532852-16533008) | |
| 228-377, gnl|galGal2|chr6 (8665701-8665503) | |
| 228-377, gnl|hg17|chr10 (101943707-101943913) | |
| 228-377, gnl|Hg17|chr10 (101943880-101943731) | |
| 228-377, gnl|loxAfr1|scaffold_6535 (27437-27231) | |
| 228-377, gnl|mm7|chr19 (43972147-43972349) | |
| 228-377, gnl|Mm7|chr19 (43972315-43972166) | |
| 228-377, gnl|monDom2|scaffold_41 (10415981-10416150) | |
| 228-377, gnl|oryCun1|scaffold_191349 (2185-2384) | |
| 228-377, gnl|panTro1|chr8 (103686773-103686979) | |
| 228-377, gnl|rheMac2|chr9 (99794533-99794739) | |
| 228-377, gnl|rn3|chr1 (249411553-249411351) | |
| 228-377, gnl|tetNig1|chr17 (4585625-4585479) | |
| 228-377, gnl|xenTro1|scaffold_444 (995553-995738) | |
| 508-608, gnl|bosTau2|chr26 (11891109-11891009) | |
| 508-608, gnl|canFam2|chr28 (15962882-15963020) | |
| 508-608, gnl|dasNov1|scaffold_11855 (42802-42932) | |
| 508-608, gnl|echTel1|scaffold_323659 (49411-49273) | |
| 508-608, gnl|galGal2|chr6 (8667935-8667799) | |
| 508-608, gnl|hg17|chr10 (101940600-101940738) | |
| 508-608, gnl|Hg17|chr10 (101940716-101940616) | |
| 508-608, gnl|loxAfr1|scaffold_6535 (30255-30117) | |
| 508-608, gnl|mm7|chr19 (43969288-43969426) | |
| 508-608, gnl|Mm7|chr19 (43969404-43969304) | |
| 508-608, gnl|monDom2|scaffold_41 (10411939-10412066) | |
| 508-608, gnl|oryCun1|scaffold_212576 (22518-22656) | |
| 508-608, gnl|panTro1|chr8 (103683679-103683817) | |
| 508-608, gnl|rheMac2|chr9 (99791419-99791557) | |
| 508-608, gnl|rn3|chr1 (249414495-249414357) | |
| 977-1559, gnl|bosTau2|chr26 (11889851-11889244) | |
| 977-1559, gnl|Hg17|chr10 (101938843-101938248) | |
| 977-1559, gnl|Mm7|chr19 (43967889-43967340) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cte (0.87822) | |
| aor (0.585823) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| ova (0.387397) | |
| fty (0.351679) | |
| fco (0.314416) | |
| sme (0.305437) | |
| ski (0.29347) | |
| liv (0.292569) | |
| lin (0.291206) | |
| sug (0.254582) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| sin (0.174948) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| aor (0.585823) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| ova (0.387397) | |
| fty (0.351679) | |
| fco (0.314416) | |
| sme (0.305437) | |
| ski (0.29347) | |
| liv (0.292569) | |
| lin (0.291206) | |
| sug (0.254582) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| sin (0.174948) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| ldo (0.0970026) |