Non-Coding RNA Search

Ss1.1-Emb1-C0005212_E20.5

Sequence:


               
               ATGTTAGCAATGTTCTTTCTTTTCAAGAAATATCTTCTGTGCAAACAAGTACACAGCTAT
TTAATGGCATGACGGTTAAAGCTCGAGCTACTACTCGGGAAGTCATGGCCACTTATACTA
TTGAGGACATAGTTATTGAACTTATAATACAGCTGCCTTCGAATTACCCATTGGGTTCAA
TAACAGTAGAAAGTGGGAAAAGAGTTGGCGTGGCTGTTCAGCAGTGGCGGAACTGGATGC
TACAGCTAAGCACTTACCTCACCCACCAGAATGGAAGTATTATGGAAGGCTTAGCATTGT
GGAAAAATAATGTAGACAAACGTTTTGAGGGTGTTGAAGATTGCATGATCTGTTTCTCGG
TCATTCACGGCTTCAACTATTCTCTTCCCAAAAAAGCCTGTAGGACATGCAAGAAAAAGT
TCCATTCAGCCTGCTTGTACAAATGGTTCACGTCTAGCAACAAATCCACTTGTCCACTCT
GTCGTGAGACCTTTTTCTGAGGTTTGTTTGTTTTTGTTTTTGTTTTTTCACATTGGAAAT
GATCCTGAAGTAAATCAGGCAAAGACAGTGGATTTGGATTCATCTTCAAGCGTTGATTTG
AGGAGGCGAGTGAGCATTACTTTCGAATAAGACCTTATCTGGAAAATTATTTTGATTAAT
GTAATGATCCTAAAATCAGGTTTACTTACCTTTAGATTGCTTTGTAAATGTTTGGAAACG
TTTTCTTTTACATAAGAATATTACATATTGGAGAGAAAATATTTATATTAATAGTTTAAT
CTCTTTGTATATTTAAAAATAAATATGGAAATTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTAGCAATGTTCTTTCTTTTCAAGAAATATCTTCTGTGCAAACAAGTACACAGCTAT
TTAATGGCATGACGGTTAAAGCTCGAGCTACTACTCGGGAAGTCATGGCCACTTATACTA
TTGAGGACATAGTTATTGAACTTATAATACAGCTGCCTTCGAATTACCCATTGGGTTCAA
TAACAGTAGAAAGTGGGAAAAGAGTTGGCGTGGCTGTTCAGCAGTGGCGGAACTGGATGC
TACAGCTAAGCACTTACCTCACCCACCAGAATGGAAGTATTATGGAAGGCTTAGCATTGT
GGAAAAATAATGTAGACAAACGTTTTGAGGGTGTTGAAGATTGCATGATCTGTTTCTCGG
TCATTCACGGCTTCAACTATTCTCTTCCCAAAAAAGCCTGTAGGACATGCAAGAAAAAGT
TCCATTCAGCCTGCTTGTACAAATGGTTCACGTCTAGCAACAAATCCACTTGTCCACTCT
GTCGTGAGACCTTTTTCTGAGGTTTGTTTGTTTTTGTTTTTGTTTTTTCACATTGGAAAT
GATCCTGAAGTAAATCAGGCAAAGACAGTGGATTTGGATTCATCTTCAAGCGTTGATTTG
AGGAGGCGAGTGAGCATTACTTTCGAATAAGACCTTATCTGGAAAATTATTTTGATTAAT
GTAATGATCCTAAAATCAGGTTTACTTACCTTTAGATTGCTTTGTAAATGTTTGGAAACG
TTTTCTTTTACATAAGAATATTACATATTGGAGAGAAAATATTTATATTAATAGTTTAAT
CTCTTTGTATATTTAAAAATAAATATGGAAATTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55778393|gb|AAH86523.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55778393|gb|AAH86523.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-221, + strand, RNAz p=0.590046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-221, + strand, RNAz p=0.590046

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-268, gnl|bosTau2|chr1 (6612566-6612792)
               

               
               41-268, gnl|Hg17|chr21 (29226887-29226664)
               

               
               41-268, gnl|Mm7|chr16 (87422862-87422616)
               


               
               437-811, gnl|bosTau2|chr1 (6615228-6615588)
               

               
               437-811, gnl|Hg17|chr21 (29224704-29224352)
               

               
               437-811, gnl|Mm7|chr16 (87420956-87420616)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-268, gnl|bosTau2|chr1 (6612566-6612792)
               

               
               41-268, gnl|Hg17|chr21 (29226887-29226664)
               

               
               41-268, gnl|Mm7|chr16 (87422862-87422616)
               


               
               437-811, gnl|bosTau2|chr1 (6615228-6615588)
               

               
               437-811, gnl|Hg17|chr21 (29224704-29224352)
               

               
               437-811, gnl|Mm7|chr16 (87420956-87420616)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               lyg (0.133103)

	41-268, gnl\|bosTau2\|chr1 (6612566-6612792)
	41-268, gnl\|Hg17\|chr21 (29226887-29226664)
	41-268, gnl\|Mm7\|chr16 (87422862-87422616)

	437-811, gnl\|bosTau2\|chr1 (6615228-6615588)
	437-811, gnl\|Hg17\|chr21 (29224704-29224352)
	437-811, gnl\|Mm7\|chr16 (87420956-87420616)