Ss1.1-Emb1-C0005212_F14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGGAAGTCCCTGCTCCCAGAGCCATTAGGACTCCAGTGGTCAAGAAGCCAGAGCCGC CCAGTAAACCCTCCCCGGCCACTCCTAGTCGGAAGCGCAGTCTTGGGGTCTCTGATGAGG AAGAAGTGGAGGAAGAGGCTGAGAGGAGGAAGGAGCGGTCCAAGCGGGGCAAGTTTGCTG TGAAGGAGGAAAAAAAGGACTTGAATGAGCTCTCAGACAGTGCTGGGGAAGAGGACTCAG GTGATGTCAAGAGCGCTCAGAAAGATAAAGGGCTGCATGTGGAGGTGCGTGTGAACAGGG AGTGGTACACAGGCCGTGTCACAGCCGTGGAGGTGGGCAAGAACGTGGTGCGGTGGAAGG TGAAGTTTGACTATGTGCCCACGGACACAACACCGAGAGACCGCTGGGTGGAGAAGGGCA GTGAGGACGTGCGGTTGATGAAGCCCCCCTCCCCGGAGTACCAGAGCCCAGACACGCAGC AGGAGGGTGGAGAGGAGGAAGAGGAGGCGGCAGTGGCCCAGCAGGCTGTGGCCATGGTGG AGCCCTCCACCTCAGACTGCATTCGAATCGAGCCCGACACCACTGCCCCTAGCACCAGCC ATGAGACCATTGACCTGCTCGTCCAGATCCTTCGGAATTGTTTACGGTACTTCCTGCCTC CAAGTTTCCCCATCTCCAAAAAGGAGCTGAGTGCTATGAATTCGGAGGAACTAATATCAT TTCCTCTGAAAGAGTACTTCAAGCAGTATGAAGTGGGGCTCCAGAATCTGTGCCATTCCT ACCAGAGCCGTGCTGACTCTCGGGCCAAGGCCTCCGAGGAGAGCCTGCGCACCTCTGAGA GAAAGCTCCGCGAGACGGAGGAGAAGCTGCAGAAGCTGAGGACCAACATCGTGGCGCTCC TGCAAAAGGTGCAGGAGGACATAGACATTAACACAGATGACGAGCTGGATGCCTACATCG AGGACCTGATCACCAAGGGGGACTAAGGGGGCCAGAGATCAGCTCCCTTGCCCTTAGGCG AGCTCCTGGGGGTGGTGTATCATTTATTGGTTGAGGACTTAACCTTGGTTTGAGTCACAT GGGACATTTGTGCTTTTGGAGGGAAAGAGACTCTGATTCTTTGAATCTTCCTCCCTAAGT TTATAAATATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGGAAGTCCCTGCTCCCAGAGCCATTAGGACTCCAGTGGTCAAGAAGCCAGAGCCGC CCAGTAAACCCTCCCCGGCCACTCCTAGTCGGAAGCGCAGTCTTGGGGTCTCTGATGAGG AAGAAGTGGAGGAAGAGGCTGAGAGGAGGAAGGAGCGGTCCAAGCGGGGCAAGTTTGCTG TGAAGGAGGAAAAAAAGGACTTGAATGAGCTCTCAGACAGTGCTGGGGAAGAGGACTCAG GTGATGTCAAGAGCGCTCAGAAAGATAAAGGGCTGCATGTGGAGGTGCGTGTGAACAGGG AGTGGTACACAGGCCGTGTCACAGCCGTGGAGGTGGGCAAGAACGTGGTGCGGTGGAAGG TGAAGTTTGACTATGTGCCCACGGACACAACACCGAGAGACCGCTGGGTGGAGAAGGGCA GTGAGGACGTGCGGTTGATGAAGCCCCCCTCCCCGGAGTACCAGAGCCCAGACACGCAGC AGGAGGGTGGAGAGGAGGAAGAGGAGGCGGCAGTGGCCCAGCAGGCTGTGGCCATGGTGG AGCCCTCCACCTCAGACTGCATTCGAATCGAGCCCGACACCACTGCCCCTAGCACCAGCC ATGAGACCATTGACCTGCTCGTCCAGATCCTTCGGAATTGTTTACGGTACTTCCTGCCTC CAAGTTTCCCCATCTCCAAAAAGGAGCTGAGTGCTATGAATTCGGAGGAACTAATATCAT TTCCTCTGAAAGAGTACTTCAAGCAGTATGAAGTGGGGCTCCAGAATCTGTGCCATTCCT ACCAGAGCCGTGCTGACTCTCGGGCCAAGGCCTCCGAGGAGAGCCTGCGCACCTCTGAGA GAAAGCTCCGCGAGACGGAGGAGAAGCTGCAGAAGCTGAGGACCAACATCGTGGCGCTCC TGCAAAAGGTGCAGGAGGACATAGACATTAACACAGATGACGAGCTGGATGCCTACATCG AGGACCTGATCACCAAGGGGGACTAAGGGGGCCAGAGATCAGCTCCCTTGCCCTTAGGCG AGCTCCTGGGGGTGGTGTATCATTTATTGGTTGAGGACTTAACCTTGGTTTGAGTCACAT GGGACATTTGTGCTTTTGGAGGGAAAGAGACTCTGATTCTTTGAATCTTCCTCCCTAAGT TTATAAATATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 77-918, + strand, RNAz p=0.842451 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 77-918, + strand, RNAz p=0.842451 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 77-209, gnl|bosTau2|chr17 (43022327-43022195) | |
| 77-209, gnl|Hg17|chr22 (29654733-29654601) | |
| 77-209, gnl|Mm7|chr11 (3636616-3636748) | |
| 263-407, gnl|bosTau2|chr17 (43021374-43021230) | |
| 263-407, gnl|canFam2|chr26 (26989073-26989233) | |
| 263-407, gnl|danRer3|chrUn (28130510-28130662) | |
| 263-407, gnl|echTel1|scaffold_221569 (6112-6273) | |
| 263-407, gnl|fr1|chrUn (1562946-1563103) | |
| 263-407, gnl|galGal2|chr15 (9848267-9848425) | |
| 263-407, gnl|hg17|chr22 (29653428-29653586) | |
| 263-407, gnl|Hg17|chr22 (29653573-29653429) | |
| 263-407, gnl|loxAfr1|scaffold_5599 (4-157) | |
| 263-407, gnl|mm7|chr11 (3637533-3637376) | |
| 263-407, gnl|Mm7|chr11 (3637386-3637530) | |
| 263-407, gnl|monDom2|scaffold_89 (5579056-5579210) | |
| 263-407, gnl|oryCun1|scaffold_198262 (7047-7205) | |
| 263-407, gnl|panTro1|chr23 (29743469-29743627) | |
| 263-407, gnl|rheMac2|chr10 (74810059-74810217) | |
| 263-407, gnl|rn3|chr14 (84350828-84350670) | |
| 263-407, gnl|tetNig1|chr12 (6119804-6119948) | |
| 263-407, gnl|xenTro1|scaffold_207 (1376855-1376708) | |
| 728-918, gnl|bosTau2|chr17 (43018964-43018774) | |
| 728-918, gnl|canFam2|chr26 (26984624-26984872) | |
| 728-918, gnl|danRer3|chrUn (28122154-28122361) | |
| 728-918, gnl|echTel1|scaffold_221569 (761-994) | |
| 728-918, gnl|fr1|chrUn (1562229-1562436) | |
| 728-918, gnl|galGal2|chr15 (9845838-9846055) | |
| 728-918, gnl|hg17|chr22 (29648536-29648784) | |
| 728-918, gnl|Hg17|chr22 (29648749-29648559) | |
| 728-918, gnl|loxAfr1|scaffold_91715 (5192-5440) | |
| 728-918, gnl|mm7|chr11 (3640325-3640093) | |
| 728-918, gnl|Mm7|chr11 (3640113-3640303) | |
| 728-918, gnl|monDom2|scaffold_89 (5575704-5575948) | |
| 728-918, gnl|oryCun1|scaffold_198262 (2858-3104) | |
| 728-918, gnl|panTro1|chr23 (29738590-29738838) | |
| 728-918, gnl|rheMac2|chr10 (74805027-74805275) | |
| 728-918, gnl|rn3|chr14 (84353685-84353453) | |
| 728-918, gnl|tetNig1|chr12 (6119103-6119297) | |
| 728-918, gnl|xenTro1|scaffold_207 (1380243-1380004) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-209, gnl|bosTau2|chr17 (43022327-43022195) | |
| 77-209, gnl|Hg17|chr22 (29654733-29654601) | |
| 77-209, gnl|Mm7|chr11 (3636616-3636748) | |
| 263-407, gnl|bosTau2|chr17 (43021374-43021230) | |
| 263-407, gnl|canFam2|chr26 (26989073-26989233) | |
| 263-407, gnl|danRer3|chrUn (28130510-28130662) | |
| 263-407, gnl|echTel1|scaffold_221569 (6112-6273) | |
| 263-407, gnl|fr1|chrUn (1562946-1563103) | |
| 263-407, gnl|galGal2|chr15 (9848267-9848425) | |
| 263-407, gnl|hg17|chr22 (29653428-29653586) | |
| 263-407, gnl|Hg17|chr22 (29653573-29653429) | |
| 263-407, gnl|loxAfr1|scaffold_5599 (4-157) | |
| 263-407, gnl|mm7|chr11 (3637533-3637376) | |
| 263-407, gnl|Mm7|chr11 (3637386-3637530) | |
| 263-407, gnl|monDom2|scaffold_89 (5579056-5579210) | |
| 263-407, gnl|oryCun1|scaffold_198262 (7047-7205) | |
| 263-407, gnl|panTro1|chr23 (29743469-29743627) | |
| 263-407, gnl|rheMac2|chr10 (74810059-74810217) | |
| 263-407, gnl|rn3|chr14 (84350828-84350670) | |
| 263-407, gnl|tetNig1|chr12 (6119804-6119948) | |
| 263-407, gnl|xenTro1|scaffold_207 (1376855-1376708) | |
| 728-918, gnl|bosTau2|chr17 (43018964-43018774) | |
| 728-918, gnl|canFam2|chr26 (26984624-26984872) | |
| 728-918, gnl|danRer3|chrUn (28122154-28122361) | |
| 728-918, gnl|echTel1|scaffold_221569 (761-994) | |
| 728-918, gnl|fr1|chrUn (1562229-1562436) | |
| 728-918, gnl|galGal2|chr15 (9845838-9846055) | |
| 728-918, gnl|hg17|chr22 (29648536-29648784) | |
| 728-918, gnl|Hg17|chr22 (29648749-29648559) | |
| 728-918, gnl|loxAfr1|scaffold_91715 (5192-5440) | |
| 728-918, gnl|mm7|chr11 (3640325-3640093) | |
| 728-918, gnl|Mm7|chr11 (3640113-3640303) | |
| 728-918, gnl|monDom2|scaffold_89 (5575704-5575948) | |
| 728-918, gnl|oryCun1|scaffold_198262 (2858-3104) | |
| 728-918, gnl|panTro1|chr23 (29738590-29738838) | |
| 728-918, gnl|rheMac2|chr10 (74805027-74805275) | |
| 728-918, gnl|rn3|chr14 (84353685-84353453) | |
| 728-918, gnl|tetNig1|chr12 (6119103-6119297) | |
| 728-918, gnl|xenTro1|scaffold_207 (1380243-1380004) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| sug (0.127291) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| sug (0.127291) | |
| cly (0.120642) | |
| clu (0.119646) |