Non-Coding RNA Search

Ss1.1-Emb1-C0005212_J22.5

Sequence:


               
               TTCCTGGCAGCCAACAAATGGAATCTTCTTGAGCATGTTTCTAATTGTTTTACCATTGGA
ATCCATGGCTCATGGTCTCTTCCATGAATTGGGTAACTGTTTAGGAGGAACATCTGTTGG
ATATGCTATTGTGATTCCCACCAACTTCTGCAGTCCTGATGGTCAGCCAACACTTCTTCC
ACCAGAACATGTACAAGAGTTAAATTTGAGGTCTACTGGAATGCTGAATGCTATCCAAAG
ATTTTTTGCATATCACATGATTGAGACATATGGATGTGACTATTCCACAAGTGGACTGTC
TTTTGATACTCTGCATTCCAAACTGAAAGCTTTCCTTGAACTTCGGACTGTGGATGGCCC
TAGACACGATACATACATTTTGTATTACAGTGGACATACCCATGGTACAGGAGAGTGGGC
TCTTGCAGGTGGAGACATACTACGCCTTGACACACTTTTAGAATGGTGGCGAGAAAAGAA
TGGTTCCTTCTGTTCCCGACTCATTATCATATTAGACAGTGAGAATTCAATTCCTTGGGT
GAAAGAAGTGAGAAAAATCAATGACCAGTATATCGCAGTGCAAGGAGCAGAGTTGACAAA
GCCAGTAGATATTGAAGAAGCTGACCCGCCACAGCTGGGTGACTTTACAAAGGACTGGGT
AGAATATAACTGCAACTCCAGTAATAACATCTGCTGGACTGAAAAGGGACGCACAGTGAA
AGCAGTGTATGGCGTGTCAAAACGGTGGAGTGATTACACCCTGCATTTGCCAACAGGAAG
TGATGTGGCCAAACACTGGATGTTACACTTTCCTCGTATTACATATCCACTAGTGCATTT
GGCAAATTGGTTGTGTGGTCTGAACCTCTTTTGGATCTGCAAAACTTGTTTTAGGTGCTT
GAAAAGATTAAAAATGAGTTGGTTTCTTCCTACTGTGCTGGACACAGGACAAGGCTTCAA
ACTTGTTAAATCTTAATTTGGAACCCAGAGTGGAATATTACTGAGAGTACGTACTACCAG
TTATCGCTAACTTGCCATTTTTTTGTATATTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGGCAGCCAACAAATGGAATCTTCTTGAGCATGTTTCTAATTGTTTTACCATTGGA
ATCCATGGCTCATGGTCTCTTCCATGAATTGGGTAACTGTTTAGGAGGAACATCTGTTGG
ATATGCTATTGTGATTCCCACCAACTTCTGCAGTCCTGATGGTCAGCCAACACTTCTTCC
ACCAGAACATGTACAAGAGTTAAATTTGAGGTCTACTGGAATGCTGAATGCTATCCAAAG
ATTTTTTGCATATCACATGATTGAGACATATGGATGTGACTATTCCACAAGTGGACTGTC
TTTTGATACTCTGCATTCCAAACTGAAAGCTTTCCTTGAACTTCGGACTGTGGATGGCCC
TAGACACGATACATACATTTTGTATTACAGTGGACATACCCATGGTACAGGAGAGTGGGC
TCTTGCAGGTGGAGACATACTACGCCTTGACACACTTTTAGAATGGTGGCGAGAAAAGAA
TGGTTCCTTCTGTTCCCGACTCATTATCATATTAGACAGTGAGAATTCAATTCCTTGGGT
GAAAGAAGTGAGAAAAATCAATGACCAGTATATCGCAGTGCAAGGAGCAGAGTTGACAAA
GCCAGTAGATATTGAAGAAGCTGACCCGCCACAGCTGGGTGACTTTACAAAGGACTGGGT
AGAATATAACTGCAACTCCAGTAATAACATCTGCTGGACTGAAAAGGGACGCACAGTGAA
AGCAGTGTATGGCGTGTCAAAACGGTGGAGTGATTACACCCTGCATTTGCCAACAGGAAG
TGATGTGGCCAAACACTGGATGTTACACTTTCCTCGTATTACATATCCACTAGTGCATTT
GGCAAATTGGTTGTGTGGTCTGAACCTCTTTTGGATCTGCAAAACTTGTTTTAGGTGCTT
GAAAAGATTAAAAATGAGTTGGTTTCTTCCTACTGTGCTGGACACAGGACAAGGCTTCAA
ACTTGTTAAATCTTAATTTGGAACCCAGAGTGGAATATTACTGAGAGTACGTACTACCAG
TTATCGCTAACTTGCCATTTTTTTGTATATTTTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809071|ref|XP_614433.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809071|ref|XP_614433.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-903, + strand, RNAz p=0.997041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-903, + strand, RNAz p=0.997041

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-153, gnl|bosTau2|chr4 (27312500-27312644)
               

               
               9-153, gnl|Hg17|chr7 (112009326-112009182)
               

               
               9-153, gnl|Mm7|chr6 (13536124-13535980)
               


               
               425-1051, gnl|bosTau2|chr4 (27321139-27321764)
               

               
               425-1051, gnl|Hg17|chr7 (112001754-112001129)
               

               
               425-1051, gnl|Mm7|chr6 (13524374-13523749)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-153, gnl|bosTau2|chr4 (27312500-27312644)
               

               
               9-153, gnl|Hg17|chr7 (112009326-112009182)
               

               
               9-153, gnl|Mm7|chr6 (13536124-13535980)
               


               
               425-1051, gnl|bosTau2|chr4 (27321139-27321764)
               

               
               425-1051, gnl|Hg17|chr7 (112001754-112001129)
               

               
               425-1051, gnl|Mm7|chr6 (13524374-13523749)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               csk (0.422238)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	9-153, gnl\|bosTau2\|chr4 (27312500-27312644)
	9-153, gnl\|Hg17\|chr7 (112009326-112009182)
	9-153, gnl\|Mm7\|chr6 (13536124-13535980)

	425-1051, gnl\|bosTau2\|chr4 (27321139-27321764)
	425-1051, gnl\|Hg17\|chr7 (112001754-112001129)
	425-1051, gnl\|Mm7\|chr6 (13524374-13523749)

	csk (0.422238)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	mga (0.160205)
	ski (0.146735)
	pty (0.142714)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	pgl (0.118483)
	jej (0.0989218)