Ss1.1-Emb1-C0005212_L18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTCCCTGTCCACCAATTCATGAATTGAAAAAAGTACAGTGGTGAGTGCCAAAGGAAA GGTCTGGTTAAACGGGGTTCCCTGTCCACCAATTCATGATTTTCTGTCGTTTCTTCACAA AAATGGCAACCAGTGATGCTGTTCTGAAGAGACTGGAACAGAAGGGTGCAGAGGCAGATC AAATTATTGAATATCTTAAGCAGCAAGTTGCTATTCTTAAGGAGAAAGCAGTTTTGCAGG CAACTTTGAGAGAAGAGAAGAAACTTCGAGTTGAAAATGCCAAATTGAAGAAAGAAATTG AAGAATTGAAACAAGAGCTAATTAAGGCAGAAATTCAAAATGGAGTGAAACAAATACCAT TCCCATCTGGTACTGCACTGCAAGCCGATTCTATGGTTTCTGAAAATGTGATACAGTCTA CCCCAGTAACAACTATATTGTCTGAGGCCAAAGAGCAGATAAAAGAAGAAGGAGAAGAAA AGAAGGTGAAAGAGAAAGTTGAGAAGAAAGGTGAGAAAAAGGAGAAGAAACAGCAATCGG TAGCAGGAAGTGCTGACTCAAAGCCTGTTGATGTTTCCCGTCTGGATCTTCGAATTGGTT GTATCACCACTGCCAGAAAACACCCTGATGCAGATTCTTTGTATGTAGAAGAAGTTGATG TTGGAGAAACAGCTCCAAGAACCGTTGTCAGTGGCCTGGTGAATCATGTTCCTCTTGAAC AGATGCAAAATCGGATGGTGATTTTACTTTGTAACCTGAAACCTGCAAAGATGAGGGGAG TAGTATCTCAGGCAATGGTAATGTGTGCTAGTTCACCAGAGAAAGTTGAAATCTTGGCAC CTCCTCATGGGTCTGTTCCTGGTGACAGAGTTACTTTTGATGCTTTCCCTGGAGAGCCTG ACAAGGAGCTGAATCCTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGACCTTTATACTA ATGATGATTGTGTGGCTACATACAAAGGCGCTCCCTTTGAGGTGAAAGGGAAGGGAGTGT GTAGGGCTCAAACTATGGCCAACAGTGGAATAAAATAAAATGCTTCGGTTACTGAAACAC ATTGGAGAATACTTAATAACAATAAAAGGAAATATATGTCACTTGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTCCCTGTCCACCAATTCATGAATTGAAAAAAGTACAGTGGTGAGTGCCAAAGGAAA GGTCTGGTTAAACGGGGTTCCCTGTCCACCAATTCATGATTTTCTGTCGTTTCTTCACAA AAATGGCAACCAGTGATGCTGTTCTGAAGAGACTGGAACAGAAGGGTGCAGAGGCAGATC AAATTATTGAATATCTTAAGCAGCAAGTTGCTATTCTTAAGGAGAAAGCAGTTTTGCAGG CAACTTTGAGAGAAGAGAAGAAACTTCGAGTTGAAAATGCCAAATTGAAGAAAGAAATTG AAGAATTGAAACAAGAGCTAATTAAGGCAGAAATTCAAAATGGAGTGAAACAAATACCAT TCCCATCTGGTACTGCACTGCAAGCCGATTCTATGGTTTCTGAAAATGTGATACAGTCTA CCCCAGTAACAACTATATTGTCTGAGGCCAAAGAGCAGATAAAAGAAGAAGGAGAAGAAA AGAAGGTGAAAGAGAAAGTTGAGAAGAAAGGTGAGAAAAAGGAGAAGAAACAGCAATCGG TAGCAGGAAGTGCTGACTCAAAGCCTGTTGATGTTTCCCGTCTGGATCTTCGAATTGGTT GTATCACCACTGCCAGAAAACACCCTGATGCAGATTCTTTGTATGTAGAAGAAGTTGATG TTGGAGAAACAGCTCCAAGAACCGTTGTCAGTGGCCTGGTGAATCATGTTCCTCTTGAAC AGATGCAAAATCGGATGGTGATTTTACTTTGTAACCTGAAACCTGCAAAGATGAGGGGAG TAGTATCTCAGGCAATGGTAATGTGTGCTAGTTCACCAGAGAAAGTTGAAATCTTGGCAC CTCCTCATGGGTCTGTTCCTGGTGACAGAGTTACTTTTGATGCTTTCCCTGGAGAGCCTG ACAAGGAGCTGAATCCTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGACCTTTATACTA ATGATGATTGTGTGGCTACATACAAAGGCGCTCCCTTTGAGGTGAAAGGGAAGGGAGTGT GTAGGGCTCAAACTATGGCCAACAGTGGAATAAAATAAAATGCTTCGGTTACTGAAACAC ATTGGAGAATACTTAATAACAATAAAAGGAAATATATGTCACTTGTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 469-585, + strand, RNAz p=0.657587 | |
| 970-1078, + strand, RNAz p=0.821767 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-585, + strand, RNAz p=0.657587 | |
| 970-1078, + strand, RNAz p=0.821767 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 76-752, gnl|bosTau2|chr17 (18918095-18917445) | |
| 76-752, gnl|Hg17|chr20 (14056028-14056728) | |
| 76-752, gnl|Mm7|chr9 (46675044-46674338) | |
| 899-1106, gnl|bosTau2|chr17 (18916240-18916035) | |
| 899-1106, gnl|canFam2|chr20 (20177663-20177488) | |
| 899-1106, gnl|danRer3|chr1 (49850105-49849937) | |
| 899-1106, gnl|dasNov1|scaffold_46588 (2664-2835) | |
| 899-1106, gnl|echTel1|scaffold_158217 (3201-3372) | |
| 899-1106, gnl|fr1|chrUn (70945161-70945329) | |
| 899-1106, gnl|galGal2|chr4 (39006342-39006174) | |
| 899-1106, gnl|hg17|chr20 (14056820-14056987) | |
| 899-1106, gnl|Hg17|chr20 (14056829-14057035) | |
| 899-1106, gnl|loxAfr1|scaffold_12438 (39678-39507) | |
| 899-1106, gnl|mm7|chr3 (87135954-87135784) | |
| 899-1106, gnl|Mm7|chr9 (46674224-46674013) | |
| 899-1106, gnl|monDom2|scaffold_37 (3938939-3938768) | |
| 899-1106, gnl|oryCun1|scaffold_199739 (3346-3511) | |
| 899-1106, gnl|panTro1|chr21 (13912024-13912191) | |
| 899-1106, gnl|rheMac2|chr10 (47403270-47403438) | |
| 899-1106, gnl|rn3|chr5 (155269658-155269826) | |
| 899-1106, gnl|tetNig1|chr18 (5979230-5979398) | |
| 899-1106, gnl|xenTro1|scaffold_173 (542434-542266) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-752, gnl|bosTau2|chr17 (18918095-18917445) | |
| 76-752, gnl|Hg17|chr20 (14056028-14056728) | |
| 76-752, gnl|Mm7|chr9 (46675044-46674338) | |
| 899-1106, gnl|bosTau2|chr17 (18916240-18916035) | |
| 899-1106, gnl|canFam2|chr20 (20177663-20177488) | |
| 899-1106, gnl|danRer3|chr1 (49850105-49849937) | |
| 899-1106, gnl|dasNov1|scaffold_46588 (2664-2835) | |
| 899-1106, gnl|echTel1|scaffold_158217 (3201-3372) | |
| 899-1106, gnl|fr1|chrUn (70945161-70945329) | |
| 899-1106, gnl|galGal2|chr4 (39006342-39006174) | |
| 899-1106, gnl|hg17|chr20 (14056820-14056987) | |
| 899-1106, gnl|Hg17|chr20 (14056829-14057035) | |
| 899-1106, gnl|loxAfr1|scaffold_12438 (39678-39507) | |
| 899-1106, gnl|mm7|chr3 (87135954-87135784) | |
| 899-1106, gnl|Mm7|chr9 (46674224-46674013) | |
| 899-1106, gnl|monDom2|scaffold_37 (3938939-3938768) | |
| 899-1106, gnl|oryCun1|scaffold_199739 (3346-3511) | |
| 899-1106, gnl|panTro1|chr21 (13912024-13912191) | |
| 899-1106, gnl|rheMac2|chr10 (47403270-47403438) | |
| 899-1106, gnl|rn3|chr5 (155269658-155269826) | |
| 899-1106, gnl|tetNig1|chr18 (5979230-5979398) | |
| 899-1106, gnl|xenTro1|scaffold_173 (542434-542266) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| lyg (0.665513) | |
| thg (0.507164) | |
| tbr (0.462535) | |
| bfe (0.449573) | |
| tes (0.415628) | |
| fli (0.405762) | |
| ste (0.405625) | |
| col (0.390016) | |
| bla (0.373042) | |
| sag (0.36543) | |
| vin (0.332557) | |
| sme (0.305437) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ret (0.257467) | |
| sug (0.254582) | |
| pan (0.23596) | |
| med (0.232504) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.665513) | |
| thg (0.507164) | |
| tbr (0.462535) | |
| bfe (0.449573) | |
| tes (0.415628) | |
| fli (0.405762) | |
| ste (0.405625) | |
| col (0.390016) | |
| bla (0.373042) | |
| sag (0.36543) | |
| vin (0.332557) | |
| sme (0.305437) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ret (0.257467) | |
| sug (0.254582) | |
| pan (0.23596) | |
| med (0.232504) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |