Non-Coding RNA Search

Ss1.1-Emb1-C0005212_N01.5

Sequence:


               
               TTTTCAGTTGTTCTTTTTGCCATAACTTTCTCTGTGAAGACGATCAGTTTGAACATCAAG
CCAGTTGCCAAGTTTTAGAGGCGGAAACATTTAAATGTGTTTCTTGCAATCGACTGGGTC
AGCATTCCTGTCTCCGTTGTAAGGCTTGTTTCTGTGATGATCACACAAGGAGCAAGGTGT
TTAAGCAAGAAAAAGGAAAACAGCCTCCCTGCCCTAAATGTGGACATGAGACTCAGGAAA
CTAAGGATCTTAGCATGTCAACGCGCTCCCTGAAGTTTGGCAGGCAGGCTGGAGGTGACG
AGGGCGATGGAGCCTCTGGGTATGACACGTATTGGAAGAACCTTGCCTCTGATAAGTATG
GTGATACCAGCTACCACGATGAGGAAGAAGATGAGTATGAAGCAGAGGATGATGACGAGG
AGGAAGAAGAAGCTGGAAAGGATTCAGATGCCGAGTCATCAGAGTTGTTTACTAACTTGA
ATTTAGGAAGGACCTATGCTAGTGGCTACGCCCACTATGAGGAGCAAGAGAACTAGGAGG
GCTGCCTGCCCATTGATGACCTTGTCTGAGGAGCTGGAATGTGTGTGCCCGACAAATCGT
GCATGGATGTTCAAGAGCACAAGCTGCCACTTAGTGTTGTGTGAGAGACGAGTCACACTT
CCAGGGGCAAGGAGTAGGGCGTAGCGTTTTCATAGGAACTGATGATCAGGCTTCTAGCAG
AAGAAAAATGAGTTTCAAATTTAAGGTGTTTATTGATCCAAGCAATTGAACTATCATGGA
TTGGATTTTTACTGATTTCAGTAACCTAGTAAGTAGGTTTGCCAATTAAATACATATATA
GGATAAAGGAATAGGATGGTAATATATTTGTTTGAAATTAAATTGCTGTTTTTATTAAAA
AACACTGCTTATAAAATCATTCAGTCTGATTTTGTAAAATATAATGGGTAAATGAATTAT
TGTATTTTTCCTTGTTTGTCCACAGGATAAAAATCAGATGTTTTATGCTAAATTTTCATT
AAATATTCACAATATCTTAAGTAGCTATATGTATTTTTTAGCAATTGACTCATTCATTTC
TTTCTTCGCACTCTATGTCCTATGTAGTACTTCCTTTTATTGTCTAGATGTATAGACAAA
GGTGACTATATAGCCATTTTTCAGAGACACAGAATCAGTATTATTACACAGATGTTTTAC
CCAGGAAATTCCATTTTTCTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCAGTTGTTCTTTTTGCCATAACTTTCTCTGTGAAGACGATCAGTTTGAACATCAAG
CCAGTTGCCAAGTTTTAGAGGCGGAAACATTTAAATGTGTTTCTTGCAATCGACTGGGTC
AGCATTCCTGTCTCCGTTGTAAGGCTTGTTTCTGTGATGATCACACAAGGAGCAAGGTGT
TTAAGCAAGAAAAAGGAAAACAGCCTCCCTGCCCTAAATGTGGACATGAGACTCAGGAAA
CTAAGGATCTTAGCATGTCAACGCGCTCCCTGAAGTTTGGCAGGCAGGCTGGAGGTGACG
AGGGCGATGGAGCCTCTGGGTATGACACGTATTGGAAGAACCTTGCCTCTGATAAGTATG
GTGATACCAGCTACCACGATGAGGAAGAAGATGAGTATGAAGCAGAGGATGATGACGAGG
AGGAAGAAGAAGCTGGAAAGGATTCAGATGCCGAGTCATCAGAGTTGTTTACTAACTTGA
ATTTAGGAAGGACCTATGCTAGTGGCTACGCCCACTATGAGGAGCAAGAGAACTAGGAGG
GCTGCCTGCCCATTGATGACCTTGTCTGAGGAGCTGGAATGTGTGTGCCCGACAAATCGT
GCATGGATGTTCAAGAGCACAAGCTGCCACTTAGTGTTGTGTGAGAGACGAGTCACACTT
CCAGGGGCAAGGAGTAGGGCGTAGCGTTTTCATAGGAACTGATGATCAGGCTTCTAGCAG
AAGAAAAATGAGTTTCAAATTTAAGGTGTTTATTGATCCAAGCAATTGAACTATCATGGA
TTGGATTTTTACTGATTTCAGTAACCTAGTAAGTAGGTTTGCCAATTAAATACATATATA
GGATAAAGGAATAGGATGGTAATATATTTGTTTGAAATTAAATTGCTGTTTTTATTAAAA
AACACTGCTTATAAAATCATTCAGTCTGATTTTGTAAAATATAATGGGTAAATGAATTAT
TGTATTTTTCCTTGTTTGTCCACAGGATAAAAATCAGATGTTTTATGCTAAATTTTCATT
AAATATTCACAATATCTTAAGTAGCTATATGTATTTTTTAGCAATTGACTCATTCATTTC
TTTCTTCGCACTCTATGTCCTATGTAGTACTTCCTTTTATTGTCTAGATGTATAGACAAA
GGTGACTATATAGCCATTTTTCAGAGACACAGAATCAGTATTATTACACAGATGTTTTAC
CCAGGAAATTCCATTTTTCTTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858502|ref|XP_612565.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858502|ref|XP_612565.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr14 (7711044-7712262)
               

               
               1-1224, gnl|Hg17|chr4 (142508934-142513433)
               

               
               1-1224, gnl|Mm7|chr1 (91203891-91204986)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr14 (7711044-7712262)
               

               
               1-1224, gnl|Hg17|chr4 (142508934-142513433)
               

               
               1-1224, gnl|Mm7|chr1 (91203891-91204986)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               isp (0.451128)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	1-1224, gnl\|bosTau2\|chr14 (7711044-7712262)
	1-1224, gnl\|Hg17\|chr4 (142508934-142513433)
	1-1224, gnl\|Mm7\|chr1 (91203891-91204986)

	isp (0.451128)
	cmu (0.372787)
	vin (0.332557)
	kid (0.259471)
	eje (0.197668)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	duo (0.172801)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	lnt (0.142308)
	lyg (0.133103)
	sug (0.127291)
	bla (0.124347)