Ss1.1-Emb1-C0005212_P09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAATTAACTTTGAGAAATATGATGATATACCAGTAGAGGCAACTGGCAATAACTGTC CTCGACATATTGAAAGTTTCAGCGATGTTGAGATGGGAGAAATTATCATGGGGAACATTG AGCTTACTCGTTATACTCGTCCTACTCCAGTGCAGAAACATGCCATTCCTATTATCAAAG AAAAAAGAGATTTGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTTT TGCCAATTTTGAGTCAGATTTATACAGATGGTCCAGGCGAGGCTTTGAAGGCTGTGAAGG AGAATGGAAGGTATGGACGCCGTAAACAATACCCAATTTCCTTGGTTTTAGCTCCAACAA GAGAATTGGCTGTACAGATCTATGAGGAAGCCAGAAAATTTTCATACCGGTCTCGAGTTC GTCCTTGTGTGGTATATGGTGGTGCTGATATTGGTCAGCAGATTCGAGACTTAGAACGTG GATGTCACTTGTTAGTTGCCACTCCAGGACGCCTGGTGGATATGATGGAAAGAGGAAAGA TTGGGTTAGATTTTTGCAAATACTTAGTGTTGGATGAAGCTGATAGAATGTTGGATATGG GGTTTGAACCTCAAATACGTCGTATAGTTGAACAAGATACTATGCCACCAAAGGGTGTTC GCCATACCATGATGTTTAGTGCTACTTTTCCCAAGGAAATTCAGATGCTTGCTCGTGATT TCTTGGATGAATATATCTTTCTGGCTGTAGGTAGAGTTGGCTCTACCTCTGAGAACATCA CACAGAAAGTAGTTTGGGTAGAAGAGTCAGACAAAAGGTCATTTCTGCTTGACCTCCTAA ATGCAACAGGGAAGGATTCACTGACTTTAGTTTTTGTGGAGACCAAAAAGGGTGCCGATT CTTTGGAGGACTTCTTATACCATGAAGGATATGCTTGTACCAGTATTCATGGAGACCGAT CACAGAGAGATAGAGAGGAAGCCCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTAG TGGCTACTGCTGTGGCAGCAAGAGGACTAGACATTTCAAATGTGAAACATGTTATCAATT TTGATTTGCCAAGTGATATTGAGGAATATGTACATCGGATTGGCCGTACAGGACGTGTAG GAAACCTTGGCCTTGCCACCTCATTTTTCAATGAAAGAAATATAAATATCACAAAGGATT TATTGGATCTTCTTGTTGAAGCTAAACAGGAAGTACCATCTTGGTTAGAAAATATGGCAT ATGAACATCATTATAAGGGTAGCAGTCGTGGGCGTTCTAAAAGATTCAGTGGAGGATTTG GTGCCCGAGACTATCGACAAAGTAGTAGTTCTGGAAGTTCGACCTTTAGTAGTAGTCGTG CAGGCAGCAGTCGCAGTGGTGGAGGTGGTCACAGCAGCAGCAGAGGATTTAGTGGAGGTG GCTATGGAAGCTTCTACAATAGTGATGGATATGGAGGAAATTATAACTCCCAAGGGGTTG ACTGGTGGGGCAACTGAATCTCCTTTGCAGCAAAGTCACCCTTTTAAAATAAAAATTTAA ACAAAACCACCAGATAATGTTTTCCCTTGTTATAATAGATTCAGTGGAGGATTTGGTGCC CGAGACTATCGACAAAGTAGTAGTTCTGGAAGTTCGACCTTTAGTAGTAGTCGTGCAGGC AGCAGTCGCAGTGGTGGAGGTGGTCACAGCAGCAGCAGAGGATTTAGTGGAGGTGGCTAT GGAAGCTTCTACAATAGTGATGGATATGGAGGAAATTATAACTCCCAAGGGGTTGACTGG TGGGGCAACTGAATCTCCTTTGCAGCAAAGTCACCCTTTTAAAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAATTAACTTTGAGAAATATGATGATATACCAGTAGAGGCAACTGGCAATAACTGTC CTCGACATATTGAAAGTTTCAGCGATGTTGAGATGGGAGAAATTATCATGGGGAACATTG AGCTTACTCGTTATACTCGTCCTACTCCAGTGCAGAAACATGCCATTCCTATTATCAAAG AAAAAAGAGATTTGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTTT TGCCAATTTTGAGTCAGATTTATACAGATGGTCCAGGCGAGGCTTTGAAGGCTGTGAAGG AGAATGGAAGGTATGGACGCCGTAAACAATACCCAATTTCCTTGGTTTTAGCTCCAACAA GAGAATTGGCTGTACAGATCTATGAGGAAGCCAGAAAATTTTCATACCGGTCTCGAGTTC GTCCTTGTGTGGTATATGGTGGTGCTGATATTGGTCAGCAGATTCGAGACTTAGAACGTG GATGTCACTTGTTAGTTGCCACTCCAGGACGCCTGGTGGATATGATGGAAAGAGGAAAGA TTGGGTTAGATTTTTGCAAATACTTAGTGTTGGATGAAGCTGATAGAATGTTGGATATGG GGTTTGAACCTCAAATACGTCGTATAGTTGAACAAGATACTATGCCACCAAAGGGTGTTC GCCATACCATGATGTTTAGTGCTACTTTTCCCAAGGAAATTCAGATGCTTGCTCGTGATT TCTTGGATGAATATATCTTTCTGGCTGTAGGTAGAGTTGGCTCTACCTCTGAGAACATCA CACAGAAAGTAGTTTGGGTAGAAGAGTCAGACAAAAGGTCATTTCTGCTTGACCTCCTAA ATGCAACAGGGAAGGATTCACTGACTTTAGTTTTTGTGGAGACCAAAAAGGGTGCCGATT CTTTGGAGGACTTCTTATACCATGAAGGATATGCTTGTACCAGTATTCATGGAGACCGAT CACAGAGAGATAGAGAGGAAGCCCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTAG TGGCTACTGCTGTGGCAGCAAGAGGACTAGACATTTCAAATGTGAAACATGTTATCAATT TTGATTTGCCAAGTGATATTGAGGAATATGTACATCGGATTGGCCGTACAGGACGTGTAG GAAACCTTGGCCTTGCCACCTCATTTTTCAATGAAAGAAATATAAATATCACAAAGGATT TATTGGATCTTCTTGTTGAAGCTAAACAGGAAGTACCATCTTGGTTAGAAAATATGGCAT ATGAACATCATTATAAGGGTAGCAGTCGTGGGCGTTCTAAAAGATTCAGTGGAGGATTTG GTGCCCGAGACTATCGACAAAGTAGTAGTTCTGGAAGTTCGACCTTTAGTAGTAGTCGTG CAGGCAGCAGTCGCAGTGGTGGAGGTGGTCACAGCAGCAGCAGAGGATTTAGTGGAGGTG GCTATGGAAGCTTCTACAATAGTGATGGATATGGAGGAAATTATAACTCCCAAGGGGTTG ACTGGTGGGGCAACTGAATCTCCTTTGCAGCAAAGTCACCCTTTTAAAATAAAAATTTAA ACAAAACCACCAGATAATGTTTTCCCTTGTTATAATAGATTCAGTGGAGGATTTGGTGCC CGAGACTATCGACAAAGTAGTAGTTCTGGAAGTTCGACCTTTAGTAGTAGTCGTGCAGGC AGCAGTCGCAGTGGTGGAGGTGGTCACAGCAGCAGCAGAGGATTTAGTGGAGGTGGCTAT GGAAGCTTCTACAATAGTGATGGATATGGAGGAAATTATAACTCCCAAGGGGTTGACTGG TGGGGCAACTGAATCTCCTTTGCAGCAAAGTCACCCTTTTAAAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 995-1110, - strand, RNAz p=0.833744 | |
| 1149-1267, + strand, RNAz p=0.669429 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 995-1110, - strand, RNAz p=0.833744 | |
| 1149-1267, + strand, RNAz p=0.669429 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-1115, gnl|bosTau2|chrX (28778000-28779110) | |
| 1-1115, gnl|Hg17|chrX (40958267-40962095) | |
| 1-1115, gnl|Mm7|chrX (11720637-11723652) | |
| 1149-1303, gnl|bosTau2|chrX (28792605-28792451) | |
| 1149-1303, gnl|canFam2|chrX (35720840-35721013) | |
| 1149-1303, gnl|canFam2|chrX (35720853-35721013) | |
| 1149-1303, gnl|canFam2|chrX (35720859-35720971) | |
| 1149-1303, gnl|danRer3|chr3 (5186751-5186587) | |
| 1149-1303, gnl|danRer3|chr3 (5186750-5186583) | |
| 1149-1303, gnl|danRer3|chr3 (5186744-5186632) | |
| 1149-1303, gnl|dasNov1|scaffold_103535 (2451-2563) | |
| 1149-1303, gnl|dasNov1|scaffold_28058 (4816-4641) | |
| 1149-1303, gnl|dasNov1|scaffold_28058 (4806-4646) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1842-1666) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1828-1668) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1821-1710) | |
| 1149-1303, gnl|fr1|chrUn (229904454-229904276) | |
| 1149-1303, gnl|fr1|chrUn (229904442-229904277) | |
| 1149-1303, gnl|fr1|chrUn (229904436-229904324) | |
| 1149-1303, gnl|galGal2|chr1 (105730626-105730448) | |
| 1149-1303, gnl|galGal2|chr1 (105730613-105730447) | |
| 1149-1303, gnl|galGal2|chr1 (105730608-105730496) | |
| 1149-1303, gnl|hg17|chr4 (104852473-104852585) | |
| 1149-1303, gnl|hg17|chrX (40962362-40962526) | |
| 1149-1303, gnl|Hg17|chrX (40962365-40962519) | |
| 1149-1303, gnl|hg17|chrY (13466934-13467113) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4096-3918) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4083-3923) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4076-3965) | |
| 1149-1303, gnl|mm7|chrX (11724034-11724208) | |
| 1149-1303, gnl|mm7|chrX (11724047-11724207) | |
| 1149-1303, gnl|mm7|chrX (11724054-11724165) | |
| 1149-1303, gnl|Mm7|chrX (11724050-11724204) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345409-22345235) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345396-22345236) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345390-22345278) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27423-27599) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27433-27594) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27441-27552) | |
| 1149-1303, gnl|panTro1|chr3 (121238999-121239111) | |
| 1149-1303, gnl|panTro1|chrX (42257986-42258146) | |
| 1149-1303, gnl|panTro1|chrY (14028813-14028992) | |
| 1149-1303, gnl|rheMac2|chr5 (96570821-96570936) | |
| 1149-1303, gnl|rheMac2|chrX (39115810-39115998) | |
| 1149-1303, gnl|rheMac2|chrX (39115824-39115984) | |
| 1149-1303, gnl|rn3|chrX (21551692-21551514) | |
| 1149-1303, gnl|rn3|chrX (21551679-21551519) | |
| 1149-1303, gnl|rn3|chrX (21551672-21551561) | |
| 1149-1303, gnl|tetNig1|chr2 (6498234-6498071) | |
| 1149-1303, gnl|tetNig1|chr2 (6498228-6498116) | |
| 1149-1303, gnl|tetNig1|chrUn_random (129654781-129654600) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942249-942072) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942237-942080) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942231-942119) | |
| 1436-1542, gnl|bosTau2|chrX (28791881-28791776) | |
| 1436-1542, gnl|canFam2|chrX (35721670-35721788) | |
| 1436-1542, gnl|danRer3|chr3 (5185958-5185847) | |
| 1436-1542, gnl|dasNov1|scaffold_103535 (2765-2883) | |
| 1436-1542, gnl|echTel1|scaffold_228724 (950-840) | |
| 1436-1542, gnl|fr1|chrUn (229903811-229903674) | |
| 1436-1542, gnl|galGal2|chr1 (105729100-105728965) | |
| 1436-1542, gnl|hg17|chr4 (104852768-104852904) | |
| 1436-1542, gnl|Hg17|chrX (40963145-40963250) | |
| 1436-1542, gnl|mm7|chrX (11724585-11724703) | |
| 1436-1542, gnl|Mm7|chrX (11724561-11724666) | |
| 1436-1542, gnl|monDom2|scaffold_29 (22344837-22344701) | |
| 1436-1542, gnl|oryCun1|scaffold_213972 (28286-28404) | |
| 1436-1542, gnl|panTro1|chr3 (121239313-121239430) | |
| 1436-1542, gnl|rheMac2|chr5 (96571105-96571222) | |
| 1436-1542, gnl|rn3|chrX (21551007-21550889) | |
| 1436-1542, gnl|tetNig1|chr2 (6497665-6497536) | |
| 1436-1542, gnl|xenTro1|scaffold_16 (941718-941581) | |
| 1592-1837, gnl|bosTau2|chrX (28779568-28779812) | |
| 1592-1837, gnl|Hg17|chrX (40962625-40963250) | |
| 1592-1837, gnl|Mm7|chrX (11724204-11724666) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1115, gnl|bosTau2|chrX (28778000-28779110) | |
| 1-1115, gnl|Hg17|chrX (40958267-40962095) | |
| 1-1115, gnl|Mm7|chrX (11720637-11723652) | |
| 1149-1303, gnl|bosTau2|chrX (28792605-28792451) | |
| 1149-1303, gnl|canFam2|chrX (35720840-35721013) | |
| 1149-1303, gnl|canFam2|chrX (35720853-35721013) | |
| 1149-1303, gnl|canFam2|chrX (35720859-35720971) | |
| 1149-1303, gnl|danRer3|chr3 (5186751-5186587) | |
| 1149-1303, gnl|danRer3|chr3 (5186750-5186583) | |
| 1149-1303, gnl|danRer3|chr3 (5186744-5186632) | |
| 1149-1303, gnl|dasNov1|scaffold_103535 (2451-2563) | |
| 1149-1303, gnl|dasNov1|scaffold_28058 (4816-4641) | |
| 1149-1303, gnl|dasNov1|scaffold_28058 (4806-4646) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1842-1666) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1828-1668) | |
| 1149-1303, gnl|echTel1|scaffold_228724 (1821-1710) | |
| 1149-1303, gnl|fr1|chrUn (229904454-229904276) | |
| 1149-1303, gnl|fr1|chrUn (229904442-229904277) | |
| 1149-1303, gnl|fr1|chrUn (229904436-229904324) | |
| 1149-1303, gnl|galGal2|chr1 (105730626-105730448) | |
| 1149-1303, gnl|galGal2|chr1 (105730613-105730447) | |
| 1149-1303, gnl|galGal2|chr1 (105730608-105730496) | |
| 1149-1303, gnl|hg17|chr4 (104852473-104852585) | |
| 1149-1303, gnl|hg17|chrX (40962362-40962526) | |
| 1149-1303, gnl|Hg17|chrX (40962365-40962519) | |
| 1149-1303, gnl|hg17|chrY (13466934-13467113) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4096-3918) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4083-3923) | |
| 1149-1303, gnl|loxAfr1|scaffold_6969 (4076-3965) | |
| 1149-1303, gnl|mm7|chrX (11724034-11724208) | |
| 1149-1303, gnl|mm7|chrX (11724047-11724207) | |
| 1149-1303, gnl|mm7|chrX (11724054-11724165) | |
| 1149-1303, gnl|Mm7|chrX (11724050-11724204) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345409-22345235) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345396-22345236) | |
| 1149-1303, gnl|monDom2|scaffold_29 (22345390-22345278) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27423-27599) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27433-27594) | |
| 1149-1303, gnl|oryCun1|scaffold_213972 (27441-27552) | |
| 1149-1303, gnl|panTro1|chr3 (121238999-121239111) | |
| 1149-1303, gnl|panTro1|chrX (42257986-42258146) | |
| 1149-1303, gnl|panTro1|chrY (14028813-14028992) | |
| 1149-1303, gnl|rheMac2|chr5 (96570821-96570936) | |
| 1149-1303, gnl|rheMac2|chrX (39115810-39115998) | |
| 1149-1303, gnl|rheMac2|chrX (39115824-39115984) | |
| 1149-1303, gnl|rn3|chrX (21551692-21551514) | |
| 1149-1303, gnl|rn3|chrX (21551679-21551519) | |
| 1149-1303, gnl|rn3|chrX (21551672-21551561) | |
| 1149-1303, gnl|tetNig1|chr2 (6498234-6498071) | |
| 1149-1303, gnl|tetNig1|chr2 (6498228-6498116) | |
| 1149-1303, gnl|tetNig1|chrUn_random (129654781-129654600) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942249-942072) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942237-942080) | |
| 1149-1303, gnl|xenTro1|scaffold_16 (942231-942119) | |
| 1436-1542, gnl|bosTau2|chrX (28791881-28791776) | |
| 1436-1542, gnl|canFam2|chrX (35721670-35721788) | |
| 1436-1542, gnl|danRer3|chr3 (5185958-5185847) | |
| 1436-1542, gnl|dasNov1|scaffold_103535 (2765-2883) | |
| 1436-1542, gnl|echTel1|scaffold_228724 (950-840) | |
| 1436-1542, gnl|fr1|chrUn (229903811-229903674) | |
| 1436-1542, gnl|galGal2|chr1 (105729100-105728965) | |
| 1436-1542, gnl|hg17|chr4 (104852768-104852904) | |
| 1436-1542, gnl|Hg17|chrX (40963145-40963250) | |
| 1436-1542, gnl|mm7|chrX (11724585-11724703) | |
| 1436-1542, gnl|Mm7|chrX (11724561-11724666) | |
| 1436-1542, gnl|monDom2|scaffold_29 (22344837-22344701) | |
| 1436-1542, gnl|oryCun1|scaffold_213972 (28286-28404) | |
| 1436-1542, gnl|panTro1|chr3 (121239313-121239430) | |
| 1436-1542, gnl|rheMac2|chr5 (96571105-96571222) | |
| 1436-1542, gnl|rn3|chrX (21551007-21550889) | |
| 1436-1542, gnl|tetNig1|chr2 (6497665-6497536) | |
| 1436-1542, gnl|xenTro1|scaffold_16 (941718-941581) | |
| 1592-1837, gnl|bosTau2|chrX (28779568-28779812) | |
| 1592-1837, gnl|Hg17|chrX (40962625-40963250) | |
| 1592-1837, gnl|Mm7|chrX (11724204-11724666) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tra (0.61546) | |
| sug (0.509165) | |
| elu (0.385356) | |
| ski (0.29347) | |
| ssp (0.271039) | |
| tes (0.207814) | |
| sto (0.179824) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.61546) | |
| sug (0.509165) | |
| elu (0.385356) | |
| ski (0.29347) | |
| ssp (0.271039) | |
| tes (0.207814) | |
| sto (0.179824) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| spc (0.113366) | |
| ldo (0.0970026) |