Non-Coding RNA Search

Ss1.1-Emb1-C0005212_P10.5

Sequence:


               
               GCGGCCGCGCGCTGGTGCGTCCGAGCGAGCACGCGCTCGTGGACAACGACGGCCTGTACG
ACCCGGATTGCGACCAGCAGGGCAGCTTCAAGGCGCGCCAGTGCAACCAGACGTCCGTGT
GCTGGTGCGTGAACTCGGTGGGCGTGCGCCGCACCGACAAGGGCGACCAGAGCCTGCGCT
GCGACGAGCTGGTGCGCACCCACCACATCCTCATCGACCTGCGCCACCGCCCGGACACCC
GCGCCTTCAACCACTCGGACCTGGACGCCGAGCTGCGGCGGCTCTTCCGGGAGCGCTACC
TGCTGCACCCCAAGTTCGTGGCTGCAGTGCATTACGAGCACCCCACCATTCAGATCGAGC
TGCAGCAGAACGCGTCGCAGAAGGCCGCCGGCGACGTGGACATCGCCGATGCAGCCTACT
ACTTCGAGAGGGACGTCAAGGGCGAGTCGGTGTTCCCTGGCCGCGGCGGCCTAGACGTGC
GCGTGCGCGGAGAGCCCCTGCTGCTGGAGCGGACGCTCATCTACTACCTGGACGAGAAGC
CCCCCCAGTTCTCCATGAAGCGCCTCACCAGCGGCCTCATCGCCGTCATCGTCGTGGTCG
CGGTGGCCCTCGTCGCCGGCGTGGTTGTCCTGGTGGTTACCAACCGGAGGAAGTCTGGGA
AATACAAGAAGGTGGAGGTCAAGGAACTGGGGGAGATGAGAAAGGAACCGAGCTTGTAGG
TACCGGTGGGGCTGGGGTCCGGTGGGGTATCAGATTTCAGCAAGGACCCAGACCCAAATG
AGTCATGCTTCTTGCTTGATTCTTGGCCCCAAGGGGACATTTCTCCTCCCAAGCCCCTGC
CCCCCACCCACATGGCTACCAAATGTTAATAGATCCTATTCTCAGGGTCACCTCTCTTTC
TGACTGCTCTCCTGAAAGAAGCATTTCTAAAAACCCTTCCTTTTCAGTCCAACCAGAAAC
CTTATTGGAAGACTAAGGGAAGTTTGGCATAGGGTTATGTATAAGAATCTAGTGTCTGTA
TGACAACCCAGCATCGTTTACAAGTGACGCAATCGATGTTGAAGGCTTACATGCGTTTAG
GTGGGAAACAGTGCTTTTACTGACTTGGGTTTAAGTTATTTGATTAGCTCCACTTGTATC
GTGACCTTCCTGATGAGGAGTTTGCTAATTGGGCCTGTATAGTATCCTTATTTACCATCG
TTTGTATTACCGACCACACATATTCGTGTCACTGGGAAAGAAGCCTGTTTCAGCTGTTTC
CTTTTAGATGTCTTTGTTGGAAGGCAGACTGTGGCCCAGAAACTCAGCATCTGTTCTTCA
GCTTGCCCTTCTTACAGCTGCTATTAGTAACGTTTCTTTTGTAAAATGTTTGTACATAGG
TTGTCTTTGATAATGCTGTTGTGATTTTTTAAAAACACGAATTTAATAAAAATATGGAAA
AGACACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGCGCTGGTGCGTCCGAGCGAGCACGCGCTCGTGGACAACGACGGCCTGTACG
ACCCGGATTGCGACCAGCAGGGCAGCTTCAAGGCGCGCCAGTGCAACCAGACGTCCGTGT
GCTGGTGCGTGAACTCGGTGGGCGTGCGCCGCACCGACAAGGGCGACCAGAGCCTGCGCT
GCGACGAGCTGGTGCGCACCCACCACATCCTCATCGACCTGCGCCACCGCCCGGACACCC
GCGCCTTCAACCACTCGGACCTGGACGCCGAGCTGCGGCGGCTCTTCCGGGAGCGCTACC
TGCTGCACCCCAAGTTCGTGGCTGCAGTGCATTACGAGCACCCCACCATTCAGATCGAGC
TGCAGCAGAACGCGTCGCAGAAGGCCGCCGGCGACGTGGACATCGCCGATGCAGCCTACT
ACTTCGAGAGGGACGTCAAGGGCGAGTCGGTGTTCCCTGGCCGCGGCGGCCTAGACGTGC
GCGTGCGCGGAGAGCCCCTGCTGCTGGAGCGGACGCTCATCTACTACCTGGACGAGAAGC
CCCCCCAGTTCTCCATGAAGCGCCTCACCAGCGGCCTCATCGCCGTCATCGTCGTGGTCG
CGGTGGCCCTCGTCGCCGGCGTGGTTGTCCTGGTGGTTACCAACCGGAGGAAGTCTGGGA
AATACAAGAAGGTGGAGGTCAAGGAACTGGGGGAGATGAGAAAGGAACCGAGCTTGTAGG
TACCGGTGGGGCTGGGGTCCGGTGGGGTATCAGATTTCAGCAAGGACCCAGACCCAAATG
AGTCATGCTTCTTGCTTGATTCTTGGCCCCAAGGGGACATTTCTCCTCCCAAGCCCCTGC
CCCCCACCCACATGGCTACCAAATGTTAATAGATCCTATTCTCAGGGTCACCTCTCTTTC
TGACTGCTCTCCTGAAAGAAGCATTTCTAAAAACCCTTCCTTTTCAGTCCAACCAGAAAC
CTTATTGGAAGACTAAGGGAAGTTTGGCATAGGGTTATGTATAAGAATCTAGTGTCTGTA
TGACAACCCAGCATCGTTTACAAGTGACGCAATCGATGTTGAAGGCTTACATGCGTTTAG
GTGGGAAACAGTGCTTTTACTGACTTGGGTTTAAGTTATTTGATTAGCTCCACTTGTATC
GTGACCTTCCTGATGAGGAGTTTGCTAATTGGGCCTGTATAGTATCCTTATTTACCATCG
TTTGTATTACCGACCACACATATTCGTGTCACTGGGAAAGAAGCCTGTTTCAGCTGTTTC
CTTTTAGATGTCTTTGTTGGAAGGCAGACTGTGGCCCAGAAACTCAGCATCTGTTCTTCA
GCTTGCCCTTCTTACAGCTGCTATTAGTAACGTTTCTTTTGTAAAATGTTTGTACATAGG
TTGTCTTTGATAATGCTGTTGTGATTTTTTAAAAACACGAATTTAATAAAAATATGGAAA
AGACACAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30583349|gb|AAP35919.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30583349|gb|AAP35919.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               799-908, - strand, RNAz p=0.969223
               

               
               1247-1358, - strand, RNAz p=0.678526

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               799-908, - strand, RNAz p=0.969223
               

               
               1247-1358, - strand, RNAz p=0.678526

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1455, gnl|bosTau2|chr3 (65266743-65265294)
               

               
               1-1455, gnl|Hg17|chr1 (58754596-58753116)
               

               
               1-1455, gnl|Mm7|chr6 (67517235-67515862)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1455, gnl|bosTau2|chr3 (65266743-65265294)
               

               
               1-1455, gnl|Hg17|chr1 (58754596-58753116)
               

               
               1-1455, gnl|Mm7|chr6 (67517235-67515862)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               bla (3.85476)
               

               
               tra (1.4771)
               

               
               ski (1.46735)
               

               
               rec (1.38456)
               

               
               lyg (1.33103)
               

               
               sag (1.27901)
               

               
               csk (0.562984)
               

               
               ret (0.514933)
               

               
               amn (0.417711)
               

               
               cmu (0.372787)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (3.85476)
               

               
               tra (1.4771)
               

               
               ski (1.46735)
               

               
               rec (1.38456)
               

               
               lyg (1.33103)
               

               
               sag (1.27901)
               

               
               csk (0.562984)
               

               
               ret (0.514933)
               

               
               amn (0.417711)
               

               
               cmu (0.372787)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	799-908, - strand, RNAz p=0.969223
	1247-1358, - strand, RNAz p=0.678526

	1-1455, gnl\|bosTau2\|chr3 (65266743-65265294)
	1-1455, gnl\|Hg17\|chr1 (58754596-58753116)
	1-1455, gnl\|Mm7\|chr6 (67517235-67515862)

	bla (3.85476)
	tra (1.4771)
	ski (1.46735)
	rec (1.38456)
	lyg (1.33103)
	sag (1.27901)
	csk (0.562984)
	ret (0.514933)
	amn (0.417711)
	cmu (0.372787)
	cut (0.339847)
	mga (0.32041)
	pty (0.285429)
	nmm (0.265604)
	ute (0.265569)
	nep (0.183925)
	mgm (0.180343)
	ton (0.1755)
	ova (0.129132)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)