Non-Coding RNA Search

Ss1.1-Emb1-C0005213_A09.5

Sequence:


               
               TTGGTACATGATTAAATGATATAAAACCTGTTAGCTTTAATTTTTCTTTCTTAATTACAA
CATAGGTTACATAAGAAGCCAAATGATGAAAGCCTAAATAAACTAATTTATACTTACCTG
AAGGTTACAAATTATACTTTGAAATTTTGTTTGTGGTTTTTGGTGTTTGACAGTAAGCCA
GAGGGGAAAACTAAATTTTGTGCCATATCATATTTGTAATAGGGTTTGTTCTTTGAGCAC
ATAATCAGAGAACAGATACTCATTGCCTTTGTGAACAAGAAAATTGTAGTTCCTAAAATT
TTATCTTAAACCACCTTAGGTGAACCATGAATTAATCTATGGTGAAATAAAACTACAGGT
GGCATTGCTTTTGCTTTTAAAAATTTTTTGCAATATATATTTTTCTTCACTGTTTTATTG
TCTTCTGTGGAAAAAATTCTTATTAAATGTAACTTTTTCTCTCTGTGCTTTATAGATAAC
CTAAAATGGCATCTTTCTCCTAATCTAGAGTTTTTGGAAACCATATATTTTTAATGAAAT
GTCAATATTTATTCTTTTATTAAACTAAATTGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTACATGATTAAATGATATAAAACCTGTTAGCTTTAATTTTTCTTTCTTAATTACAA
CATAGGTTACATAAGAAGCCAAATGATGAAAGCCTAAATAAACTAATTTATACTTACCTG
AAGGTTACAAATTATACTTTGAAATTTTGTTTGTGGTTTTTGGTGTTTGACAGTAAGCCA
GAGGGGAAAACTAAATTTTGTGCCATATCATATTTGTAATAGGGTTTGTTCTTTGAGCAC
ATAATCAGAGAACAGATACTCATTGCCTTTGTGAACAAGAAAATTGTAGTTCCTAAAATT
TTATCTTAAACCACCTTAGGTGAACCATGAATTAATCTATGGTGAAATAAAACTACAGGT
GGCATTGCTTTTGCTTTTAAAAATTTTTTGCAATATATATTTTTCTTCACTGTTTTATTG
TCTTCTGTGGAAAAAATTCTTATTAAATGTAACTTTTTCTCTCTGTGCTTTATAGATAAC
CTAAAATGGCATCTTTCTCCTAATCTAGAGTTTTTGGAAACCATATATTTTTAATGAAAT
GTCAATATTTATTCTTTTATTAAACTAAATTGTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-396, + strand, RNAz p=0.563606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-396, + strand, RNAz p=0.563606

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               90-576, gnl|bosTau2|chr8 (36256024-36256521)
               

               
               90-576, gnl|Hg17|chr2 (163042607-163043083)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-576, gnl|bosTau2|chr8 (36256024-36256521)
               

               
               90-576, gnl|Hg17|chr2 (163042607-163043083)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	90-576, gnl\|bosTau2\|chr8 (36256024-36256521)
	90-576, gnl\|Hg17\|chr2 (163042607-163043083)