Non-Coding RNA Search

Ss1.1-Emb1-C0005213_C14.5

Sequence:


               
               GGAGGCCTGAAAGGTGCACTGCAGTTCAACAGCCACACACTACATCAGTGGCTCAAAGAC
AAGAACAAGGGCGAAATATATGATGCAGCCATTGATCTGTTTACACGTTCATGTGCTGGA
TATTGTGTTGCCACCTTCATTTTGGGAATTGGAGATCGTCACAATAGTAACATCATGGTT
AAAGATGATGGACAACTGTTTCATATAGATTTTGGACACTTTTTGGATCACAAGAAGAAA
AAATTTGGTTATAAACGAGAGCGTGTGCCATTTGTTTTGACACAAGATTTCTTAATAGTG
ATTAGTAAAGGAGCCCAAGAATGCACAAAGACAAGAGAATTTGAGAGGTTTCAGGAGATG
TGTTACAAGGCTTATTTAGCTATTCGGCAGCATGCCAATCTCTTCATAAATCTTTTCTCA
ATGATGCTTGGCTCTGGAATGCCAGAACTACAATCTTTTGATGATATTGCATACATTCGA
AAGACCCTAGCTTTAGATAAAACTGAGCAAGAGGCTTTGGAATATTTCATGAAACAAATG
AATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATTAAG
CAGCATGCTTTGAACTGAGATGATAACTAAGAAACTGAAAGCTCAGAATCTGGATTCTAT
ACTGCACTGTTAATAACTGTCAACAGGCAAAGACTGATTGCATAGGAATTGCACAATCCA
TGAACAGCATTAGAATTTACAGCAAGAACAGAAATAAAATACTATATAATTTAAATAATG
TAAACGCAAACAGGGTTTGATAGCACTAAACTAGTTCATTTCAAAATTAAGCTTTAGAAT
AATGCGCAATTTCATGTTATGCCTTAAGTCCAAAAAGGTAAACTTTAAAGATTGTTTGTA
TCTTTTTTTAAAAAACAAAACAAAAAACTCCCAAAATATATAGAAATAATGGAGAAGGAA
AATGAATGATGTTCTTTTTTTGTCTTGCAAATGTTCTGTTTTGAAATGTGGACACAACAA
AGTCTCTTATTACATTAGGTCCAAGTAAACTGGAATTTGATGTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCTGAAAGGTGCACTGCAGTTCAACAGCCACACACTACATCAGTGGCTCAAAGAC
AAGAACAAGGGCGAAATATATGATGCAGCCATTGATCTGTTTACACGTTCATGTGCTGGA
TATTGTGTTGCCACCTTCATTTTGGGAATTGGAGATCGTCACAATAGTAACATCATGGTT
AAAGATGATGGACAACTGTTTCATATAGATTTTGGACACTTTTTGGATCACAAGAAGAAA
AAATTTGGTTATAAACGAGAGCGTGTGCCATTTGTTTTGACACAAGATTTCTTAATAGTG
ATTAGTAAAGGAGCCCAAGAATGCACAAAGACAAGAGAATTTGAGAGGTTTCAGGAGATG
TGTTACAAGGCTTATTTAGCTATTCGGCAGCATGCCAATCTCTTCATAAATCTTTTCTCA
ATGATGCTTGGCTCTGGAATGCCAGAACTACAATCTTTTGATGATATTGCATACATTCGA
AAGACCCTAGCTTTAGATAAAACTGAGCAAGAGGCTTTGGAATATTTCATGAAACAAATG
AATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATTAAG
CAGCATGCTTTGAACTGAGATGATAACTAAGAAACTGAAAGCTCAGAATCTGGATTCTAT
ACTGCACTGTTAATAACTGTCAACAGGCAAAGACTGATTGCATAGGAATTGCACAATCCA
TGAACAGCATTAGAATTTACAGCAAGAACAGAAATAAAATACTATATAATTTAAATAATG
TAAACGCAAACAGGGTTTGATAGCACTAAACTAGTTCATTTCAAAATTAAGCTTTAGAAT
AATGCGCAATTTCATGTTATGCCTTAAGTCCAAAAAGGTAAACTTTAAAGATTGTTTGTA
TCTTTTTTTAAAAAACAAAACAAAAAACTCCCAAAATATATAGAAATAATGGAGAAGGAA
AATGAATGATGTTCTTTTTTTGTCTTGCAAATGTTCTGTTTTGAAATGTGGACACAACAA
AGTCTCTTATTACATTAGGTCCAAGTAAACTGGAATTTGATGTTAAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               189-349, gnl|bosTau2|chr1 (57189489-57189648)
               

               
               189-349, gnl|Hg17|chr3 (180430709-180430868)
               

               
               189-349, gnl|Mm7|chr3 (32270459-32270617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-349, gnl|bosTau2|chr1 (57189489-57189648)
               

               
               189-349, gnl|Hg17|chr3 (180430709-180430868)
               

               
               189-349, gnl|Mm7|chr3 (32270459-32270617)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)

	189-349, gnl\|bosTau2\|chr1 (57189489-57189648)
	189-349, gnl\|Hg17\|chr3 (180430709-180430868)
	189-349, gnl\|Mm7\|chr3 (32270459-32270617)

	vin (0.332557)
	ret (0.257467)
	gul (0.177588)
	fbs (0.175346)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)