Ss1.1-Emb1-C0005213_M11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGGGACGCTCGCCAAGCATATCATGTCTGAACCGGAAGAAATCACTACCATGTCTGG ACAGAAGCTGCCGCTGAAGATGTCTGTCGATTACATCTCTTTCTCTGCTCACACGGACTA CCAGCAAACCAGTGAATTCATTCGTGCTTTGAAACCGCCTCACGTGATTTTAGTCCACGG AGAACAGAACGAAATGGCCAGGTTGAAAGCAGCCCTGATTCGAGAATATGAAGACAATGA CGAGGTGCACATAGAGGTTCACAATCCCCGGAATACGGAAGCAGTGACCTTGAACTTCCG GGGCGAAAAACTAGCTAAGGTCATGGGCTTTTTAGCAGACAAAAAACCAGAACAAGGCCA GCGGGTCTCAGGAATACTTGTTAAAAGAAATTTTAATTATCACATCCTTTCCCCTTGCGA CCTCTCCAATTATACTGACTTGGCCATGAGCACCGTGAAACAGACCCAAGCCATCCCATA TACCGGTCCTTTTAATTTGCTCTCTTACCAGCTCCAGAAGTTGACAGGTGATGTAGAAGA ATTAGAAATTCAAGAAAAACCTGCTTTGAAAGTGTTCAAAAATATTACTGTAATACAGGA ACCAGGAATGGTGGTATTAGAGTGGTTGGCAAACCCTTCCAATGATATGTATGCAGATAC GGTAACAACCGTGATATTAGAAGTTCAGTCAAACCCGAAAATAAGGAAAGGTGCAGTCCA GAAGGTTTCCAAAAAGTTAGAGATGCACGTTTACAGCAAGAGGTTGGAGATCATGCTCCA GGACATATTTGGAGAGGACTGTGTTAGCGTAAAGGACGGATCTGTTCTTAGTGTCACTGT GGATGGAAAAACTGCCAACATAAACTTGGAGACGCGGACCGTGGAATGTGAAGAAGGGAG TGAAGACGACGAGTCCCTCCGAGAAATGGTGGAGCTGGCTGCCCAGAGGCTGTATGAGGC CCTCACGCCAGTGCCCTGACCCCTCACGCCTCTGTAGATGTTCAAACGTCGTGTCATGCT CGGCTCTACTGTTACTTCAAATAAAAGACAGTCATTTCCCTGGGGGCCTCTTTACTCTTG ACGACAAAGGGCCTTTAGTCCAACCCTTAGATACCACTACGGGACCAGCTCATTTGTCCA TCATTGAGGACTGCTCCTTCAACTGCCGGCTGCCGAGTCTGCTCCAGGGACGGATGCAGG ACCCATGACACCGTGAAGACCCCCCCACACTGCGGGAGCAGAAGGGCTGGTCCTCTTTAG GGAAAGGACATGCATGATGGCCGGAGCTTTCATATCCATGATCTGAATTTGGATTAATAA TTAGCGCTTTTCAACGTCTTAAGCCCCTTTTCTGTTTCTTCCCTCCCGATAGTCTTTCCA AATTCCTTAGTTTATATGTTTGTAAAATTAGAATTTTCAAGATTCAATAATGTTTTCTTT ATGTAAGATCCACATTCAGTTCAGATATTCAAAAGATGCTTTTTATGATTCAGGTTCGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGGGACGCTCGCCAAGCATATCATGTCTGAACCGGAAGAAATCACTACCATGTCTGG ACAGAAGCTGCCGCTGAAGATGTCTGTCGATTACATCTCTTTCTCTGCTCACACGGACTA CCAGCAAACCAGTGAATTCATTCGTGCTTTGAAACCGCCTCACGTGATTTTAGTCCACGG AGAACAGAACGAAATGGCCAGGTTGAAAGCAGCCCTGATTCGAGAATATGAAGACAATGA CGAGGTGCACATAGAGGTTCACAATCCCCGGAATACGGAAGCAGTGACCTTGAACTTCCG GGGCGAAAAACTAGCTAAGGTCATGGGCTTTTTAGCAGACAAAAAACCAGAACAAGGCCA GCGGGTCTCAGGAATACTTGTTAAAAGAAATTTTAATTATCACATCCTTTCCCCTTGCGA CCTCTCCAATTATACTGACTTGGCCATGAGCACCGTGAAACAGACCCAAGCCATCCCATA TACCGGTCCTTTTAATTTGCTCTCTTACCAGCTCCAGAAGTTGACAGGTGATGTAGAAGA ATTAGAAATTCAAGAAAAACCTGCTTTGAAAGTGTTCAAAAATATTACTGTAATACAGGA ACCAGGAATGGTGGTATTAGAGTGGTTGGCAAACCCTTCCAATGATATGTATGCAGATAC GGTAACAACCGTGATATTAGAAGTTCAGTCAAACCCGAAAATAAGGAAAGGTGCAGTCCA GAAGGTTTCCAAAAAGTTAGAGATGCACGTTTACAGCAAGAGGTTGGAGATCATGCTCCA GGACATATTTGGAGAGGACTGTGTTAGCGTAAAGGACGGATCTGTTCTTAGTGTCACTGT GGATGGAAAAACTGCCAACATAAACTTGGAGACGCGGACCGTGGAATGTGAAGAAGGGAG TGAAGACGACGAGTCCCTCCGAGAAATGGTGGAGCTGGCTGCCCAGAGGCTGTATGAGGC CCTCACGCCAGTGCCCTGACCCCTCACGCCTCTGTAGATGTTCAAACGTCGTGTCATGCT CGGCTCTACTGTTACTTCAAATAAAAGACAGTCATTTCCCTGGGGGCCTCTTTACTCTTG ACGACAAAGGGCCTTTAGTCCAACCCTTAGATACCACTACGGGACCAGCTCATTTGTCCA TCATTGAGGACTGCTCCTTCAACTGCCGGCTGCCGAGTCTGCTCCAGGGACGGATGCAGG ACCCATGACACCGTGAAGACCCCCCCACACTGCGGGAGCAGAAGGGCTGGTCCTCTTTAG GGAAAGGACATGCATGATGGCCGGAGCTTTCATATCCATGATCTGAATTTGGATTAATAA TTAGCGCTTTTCAACGTCTTAAGCCCCTTTTCTGTTTCTTCCCTCCCGATAGTCTTTCCA AATTCCTTAGTTTATATGTTTGTAAAATTAGAATTTTCAAGATTCAATAATGTTTTCTTT ATGTAAGATCCACATTCAGTTCAGATATTCAAAAGATGCTTTTTATGATTCAGGTTCGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 227-321, - strand, RNAz p=0.587964 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 227-321, - strand, RNAz p=0.587964 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 166-321, gnl|bosTau2|chr11 (69816938-69817093) | |
| 166-321, gnl|canFam2|chr17 (9533439-9533637) | |
| 166-321, gnl|danRer3|chr20 (36754443-36754632) | |
| 166-321, gnl|echTel1|scaffold_286478 (125956-126138) | |
| 166-321, gnl|fr1|chrUn (134370738-134370534) | |
| 166-321, gnl|galGal2|chr3 (94462630-94462817) | |
| 166-321, gnl|hg17|chr2 (9538903-9539101) | |
| 166-321, gnl|Hg17|chr2 (9538924-9539079) | |
| 166-321, gnl|loxAfr1|scaffold_3572 (69431-69234) | |
| 166-321, gnl|mm7|chr12 (19664691-19664869) | |
| 166-321, gnl|Mm7|chr12 (19664707-19664862) | |
| 166-321, gnl|monDom2|scaffold_1 (127193298-127193496) | |
| 166-321, gnl|panTro1|chr12 (10184020-10184218) | |
| 166-321, gnl|rheMac2|chr13 (9542065-9542263) | |
| 166-321, gnl|rn3|chr6 (41866811-41866992) | |
| 166-321, gnl|tetNig1|chr10 (5909365-5909195) | |
| 166-321, gnl|xenTro1|scaffold_86 (55010-54824) | |
| 421-535, gnl|bosTau2|chr11 (69819524-69819638) | |
| 421-535, gnl|canFam2|chr17 (9536463-9536599) | |
| 421-535, gnl|danRer3|chr20 (36756876-36756986) | |
| 421-535, gnl|dasNov1|scaffold_20504 (50574-50702) | |
| 421-535, gnl|echTel1|scaffold_286478 (132895-133021) | |
| 421-535, gnl|fr1|chrUn (134370270-134370159) | |
| 421-535, gnl|galGal2|chr3 (94465233-94465355) | |
| 421-535, gnl|hg17|chr2 (9546362-9546492) | |
| 421-535, gnl|Hg17|chr2 (9546377-9546493) | |
| 421-535, gnl|loxAfr1|scaffold_3572 (63333-63208) | |
| 421-535, gnl|mm7|chr12 (19667374-19667500) | |
| 421-535, gnl|Mm7|chr12 (19667389-19667501) | |
| 421-535, gnl|monDom2|scaffold_1 (127199344-127199472) | |
| 421-535, gnl|panTro1|chr12 (10192162-10192292) | |
| 421-535, gnl|rheMac2|chr13 (9548848-9548976) | |
| 421-535, gnl|rn3|chr6 (41869514-41869640) | |
| 421-535, gnl|tetNig1|chr10 (5908936-5908833) | |
| 421-535, gnl|xenTro1|scaffold_86 (54194-54053) | |
| 877-1497, gnl|bosTau2|chr11 (68458924-68458307) | |
| 877-1497, gnl|Mm7|chr12 (19674052-19674608) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-321, gnl|bosTau2|chr11 (69816938-69817093) | |
| 166-321, gnl|canFam2|chr17 (9533439-9533637) | |
| 166-321, gnl|danRer3|chr20 (36754443-36754632) | |
| 166-321, gnl|echTel1|scaffold_286478 (125956-126138) | |
| 166-321, gnl|fr1|chrUn (134370738-134370534) | |
| 166-321, gnl|galGal2|chr3 (94462630-94462817) | |
| 166-321, gnl|hg17|chr2 (9538903-9539101) | |
| 166-321, gnl|Hg17|chr2 (9538924-9539079) | |
| 166-321, gnl|loxAfr1|scaffold_3572 (69431-69234) | |
| 166-321, gnl|mm7|chr12 (19664691-19664869) | |
| 166-321, gnl|Mm7|chr12 (19664707-19664862) | |
| 166-321, gnl|monDom2|scaffold_1 (127193298-127193496) | |
| 166-321, gnl|panTro1|chr12 (10184020-10184218) | |
| 166-321, gnl|rheMac2|chr13 (9542065-9542263) | |
| 166-321, gnl|rn3|chr6 (41866811-41866992) | |
| 166-321, gnl|tetNig1|chr10 (5909365-5909195) | |
| 166-321, gnl|xenTro1|scaffold_86 (55010-54824) | |
| 421-535, gnl|bosTau2|chr11 (69819524-69819638) | |
| 421-535, gnl|canFam2|chr17 (9536463-9536599) | |
| 421-535, gnl|danRer3|chr20 (36756876-36756986) | |
| 421-535, gnl|dasNov1|scaffold_20504 (50574-50702) | |
| 421-535, gnl|echTel1|scaffold_286478 (132895-133021) | |
| 421-535, gnl|fr1|chrUn (134370270-134370159) | |
| 421-535, gnl|galGal2|chr3 (94465233-94465355) | |
| 421-535, gnl|hg17|chr2 (9546362-9546492) | |
| 421-535, gnl|Hg17|chr2 (9546377-9546493) | |
| 421-535, gnl|loxAfr1|scaffold_3572 (63333-63208) | |
| 421-535, gnl|mm7|chr12 (19667374-19667500) | |
| 421-535, gnl|Mm7|chr12 (19667389-19667501) | |
| 421-535, gnl|monDom2|scaffold_1 (127199344-127199472) | |
| 421-535, gnl|panTro1|chr12 (10192162-10192292) | |
| 421-535, gnl|rheMac2|chr13 (9548848-9548976) | |
| 421-535, gnl|rn3|chr6 (41869514-41869640) | |
| 421-535, gnl|tetNig1|chr10 (5908936-5908833) | |
| 421-535, gnl|xenTro1|scaffold_86 (54194-54053) | |
| 877-1497, gnl|bosTau2|chr11 (68458924-68458307) | |
| 877-1497, gnl|Mm7|chr12 (19674052-19674608) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| med (0.348756) | |
| eye (0.341006) | |
| pan (0.23596) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.348756) | |
| eye (0.341006) | |
| pan (0.23596) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| eje (0.0988338) |