Non-Coding RNA Search

Ss1.1-Emb1-C0005213_P15.5

Sequence:


               
               TGAGGGTCAGATCAGAACCTAGAGAACTTTACTACAATAGCGTGATAAGGGTTCCATTCC
AACTGCCATCGTGTAGAATAAAAGGAGTGTTAATTAGGGACCCCCTTGATTAAAACTGTT
TTGAGTTATTTGAATAGATTAACATGATAATGCTTTGGAAATGTCATAAATTTTGACATT
GTACCAAGAGAACAACTTTGATTCTGGAACTGATTTCCATTTGTCAAATCAGGCTCCTTT
TAACATAATTGATCCCTTTAATGTAAAGCCATCTGTGGGATTAAAAGAAGTGTAAAATAA
TGATACTTTATTATTCTCTTAGCCACTTAACTTTAAAAACAATAGTATTTTTAGCTCTAA
TATCTCAAGAACACAATAATCACAAATGTTCAGTAAAATAACCTGGAACATTTTTAATGT
TTCCTTACAGTTTTTGAATGACTATGTATTTGAAAATTGAGCAGTGCTACACTACAGGGT
AGATCTGGTAAATATTATATTTGTATATTTAGAATTGCCAAGCAAATGTACCTTGACCTT
TTATTTCTAACCCTGTGTGTTAGAGCAGTTGCATGCTCTCCTGCTTTCTCTTTAACTCAC
ATTGTGAAACTGTGGATTTTGTACTCAGTGATGACTTAGGAGAAATATTATTTTCATTCA
TTACATATTAGATGTTTTTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGGTCAGATCAGAACCTAGAGAACTTTACTACAATAGCGTGATAAGGGTTCCATTCC
AACTGCCATCGTGTAGAATAAAAGGAGTGTTAATTAGGGACCCCCTTGATTAAAACTGTT
TTGAGTTATTTGAATAGATTAACATGATAATGCTTTGGAAATGTCATAAATTTTGACATT
GTACCAAGAGAACAACTTTGATTCTGGAACTGATTTCCATTTGTCAAATCAGGCTCCTTT
TAACATAATTGATCCCTTTAATGTAAAGCCATCTGTGGGATTAAAAGAAGTGTAAAATAA
TGATACTTTATTATTCTCTTAGCCACTTAACTTTAAAAACAATAGTATTTTTAGCTCTAA
TATCTCAAGAACACAATAATCACAAATGTTCAGTAAAATAACCTGGAACATTTTTAATGT
TTCCTTACAGTTTTTGAATGACTATGTATTTGAAAATTGAGCAGTGCTACACTACAGGGT
AGATCTGGTAAATATTATATTTGTATATTTAGAATTGCCAAGCAAATGTACCTTGACCTT
TTATTTCTAACCCTGTGTGTTAGAGCAGTTGCATGCTCTCCTGCTTTCTCTTTAACTCAC
ATTGTGAAACTGTGGATTTTGTACTCAGTGATGACTTAGGAGAAATATTATTTTCATTCA
TTACATATTAGATGTTTTTCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               471-584, - strand, RNAz p=0.99689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-584, - strand, RNAz p=0.99689

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               471-584, CJ469515 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ469515.1|), blast E-value=2e-33, identity=92.17% 
               

               
               471-584, DB527307 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB527307.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB528347 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB528347.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB565176 RIKEN full-length enriched human cDNA library, 
(dbj|DB565176.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB566654 RIKEN full-length enriched human cDNA library, 
(dbj|DB566654.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, ILLUMIGEN_MCQ_6808 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW 
(gb|CN642752.1|), blast E-value=2e-33, identity=92.17%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               471-584, CJ469515 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ469515.1|), blast E-value=2e-33, identity=92.17% 
               

               
               471-584, DB527307 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB527307.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB528347 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB528347.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB565176 RIKEN full-length enriched human cDNA library, 
(dbj|DB565176.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, DB566654 RIKEN full-length enriched human cDNA library, 
(dbj|DB566654.1|), blast E-value=9e-33, identity=91.23% 
               

               
               471-584, ILLUMIGEN_MCQ_6808 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW 
(gb|CN642752.1|), blast E-value=2e-33, identity=92.17%

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-684, gnl|bosTau2|chr24 (16382492-16383169)
               

               
               1-684, gnl|canFam2|chr7 (57166401-57165837)
               

               
               1-684, gnl|dasNov1|scaffold_51631 (36729-36154)
               

               
               1-684, gnl|echTel1|scaffold_256007 (5082-5658)
               

               
               1-684, gnl|hg17|chr18 (31825793-31826352)
               

               
               1-684, gnl|Hg17|chr18 (31826543-31825867)
               

               
               1-684, gnl|loxAfr1|scaffold_26758 (21742-22311)
               

               
               1-684, gnl|mm7|chr18 (24871592-24872131)
               

               
               1-684, gnl|Mm7|chr18 (24872304-24871665)
               

               
               1-684, gnl|monDom2|scaffold_4 (11399331-11398697)
               

               
               1-684, gnl|oryCun1|scaffold_137150 (3259-2697)
               

               
               1-684, gnl|panTro1|chr17 (27797237-27797796)
               

               
               1-684, gnl|rheMac2|chr18 (28957195-28957758)
               

               
               1-684, gnl|rn3|chr18 (16308918-16309460)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr24 (16382492-16383169)
               

               
               1-684, gnl|canFam2|chr7 (57166401-57165837)
               

               
               1-684, gnl|dasNov1|scaffold_51631 (36729-36154)
               

               
               1-684, gnl|echTel1|scaffold_256007 (5082-5658)
               

               
               1-684, gnl|hg17|chr18 (31825793-31826352)
               

               
               1-684, gnl|Hg17|chr18 (31826543-31825867)
               

               
               1-684, gnl|loxAfr1|scaffold_26758 (21742-22311)
               

               
               1-684, gnl|mm7|chr18 (24871592-24872131)
               

               
               1-684, gnl|Mm7|chr18 (24872304-24871665)
               

               
               1-684, gnl|monDom2|scaffold_4 (11399331-11398697)
               

               
               1-684, gnl|oryCun1|scaffold_137150 (3259-2697)
               

               
               1-684, gnl|panTro1|chr17 (27797237-27797796)
               

               
               1-684, gnl|rheMac2|chr18 (28957195-28957758)
               

               
               1-684, gnl|rn3|chr18 (16308918-16309460)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)

	471-584, CJ469515 macaque brain cDNA library QnpA Macaca fascicularis cDNA (dbj\|CJ469515.1\|), blast E-value=2e-33, identity=92.17%
	471-584, DB527307 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB527307.1\|), blast E-value=9e-33, identity=91.23%
	471-584, DB528347 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB528347.1\|), blast E-value=9e-33, identity=91.23%
	471-584, DB565176 RIKEN full-length enriched human cDNA library, (dbj\|DB565176.1\|), blast E-value=9e-33, identity=91.23%
	471-584, DB566654 RIKEN full-length enriched human cDNA library, (dbj\|DB566654.1\|), blast E-value=9e-33, identity=91.23%
	471-584, ILLUMIGEN_MCQ_6808 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW (gb\|CN642752.1\|), blast E-value=2e-33, identity=92.17%

	1-684, gnl\|bosTau2\|chr24 (16382492-16383169)
	1-684, gnl\|canFam2\|chr7 (57166401-57165837)
	1-684, gnl\|dasNov1\|scaffold_51631 (36729-36154)
	1-684, gnl\|echTel1\|scaffold_256007 (5082-5658)
	1-684, gnl\|hg17\|chr18 (31825793-31826352)
	1-684, gnl\|Hg17\|chr18 (31826543-31825867)
	1-684, gnl\|loxAfr1\|scaffold_26758 (21742-22311)
	1-684, gnl\|mm7\|chr18 (24871592-24872131)
	1-684, gnl\|Mm7\|chr18 (24872304-24871665)
	1-684, gnl\|monDom2\|scaffold_4 (11399331-11398697)
	1-684, gnl\|oryCun1\|scaffold_137150 (3259-2697)
	1-684, gnl\|panTro1\|chr17 (27797237-27797796)
	1-684, gnl\|rheMac2\|chr18 (28957195-28957758)
	1-684, gnl\|rn3\|chr18 (16308918-16309460)

	bfe (0.299715)
	fbs (0.175346)
	fco (0.157208)
	fat (0.147427)
	ebs (0.118301)